Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00498 ATGCAAAACCATTCACCAAGCCTTCCAAATCTACGCTCAAATGGTGGTCACAGGGCGCCACCACGACCCATTCCTCATGACATCACACATCTCCTTCTTCGCCACTCCCACCTTCCCTTCACCCAAATCCCCAACCCCGACCTCTTCCTCTTCAACCTCTTCATCAGAGCCTTCTCTCTCTCCCACTCACCCCACCACGCTCTCTCTCTCTCTCTACAAAAAAATGCTATCTTTTTCCCCACCCATCATCACCCATCACCCCTGACACCTTCCCCTTCCCCTTCCTCCTCAAGTCCTGCGCCTAGCTTTTGCTTCCAAAACTCGGCCATCAGTCCTGTGAGGGATTCTGTTTCTTATAACACGGTGATTAACGGGCTTGTGCGTAAGGGTCGTGCTGGTTGTTCTCTCAGGGTTATTACGGAGATGACACAGGTTTTTGTTGAGCCGGATGGGTATACGTTCGTCGCGTTTTTGTCTGCATGTTCCTCCTTCGAGGATCGGTTGATTGGGAAGGTGGTGCATGTGTTGGTGTATAGGAAATTGGATTGTTTAGGTGGGAATGTGTTGTTGGTGAATGTTGAGGTTGCTAGAAGGTTGTTTGATCAAATGGGGGGGAGAGATGTCGTTTCTTGGACTGCTATGATTAGTGGTTACTGTCATGCTGGGTGTTTTCAAGAAGCATTGGAATTGTTTGTGCAGTTGGAGGAATTGAGGATGGAACCTGACGAGGTCGTGGCAGTTGCTCCTCTTTCTGCGTGTGCATGGCTTGGTGCCCTTGAGTTGGGAAGAAGGATCCACCACAAGTATGATGGTGAGAGTTGGCAGTGTGGTTACCACAGAGGATTCGCTTGTGCTGTTGTGGATATGTATGCCAAGTGTGGAAGCATAGACACTGCTTTGGATGTGTTTGTCAACACAAGCGATGATATGAAAACTACTTTTCTCTATAACTCCATTGTGTCTGGCCTTGCTCATCATGGCCGTGGAAAGAGGCTGTTTGAGTCCATGTTGAGTGAGTATGGTGTTAATCATCAGATGGAGCATTATGGCTGTATGATTGACCTTCTTAGTAGGGCTGGTCATTTGAATGAAGCATATCGTTTGATTCAAAATATGCTGTTGAAGGCCAATGCTGTGATATGGAGAGCATTGTTGAGTGCTTGTAAGAGCCCTTTTCTGCTCCCACGCATATGCATACCGCACAACCACGATCACCTTTCGAGTAATATGGAGATCACGAGCAGCCATAACAGCGGCAGCATGATGTGGTTTTTCAAAGATAAGGGCTTTGATGACAACAGTGCACAAGGAATGTTCCGAAAGTGCCGGCGCCTCGAGGGTGTGCACCAAGAAAGAGCAAGTGAGAATTGGGACTATTTGAGAAGCATTGGCATTGAGGAAAGGAAGCTACCCTCAATTGTTTCAAAATGCCCCAAAATTCTTGCATTGGATCTTTATGAGAAGATTGTGCCCACTGTTGAGTGTCTCAGGACATTAGGAACAAAACCTAATGAGGTTGCTTCTGCCATAGCCAAATTTCCTCACATACTGTCGAACAGCGTGGAAGAGAAGCTTTGTCCCCTTTTGGCGTTCTTTCAGACTCTAGGTATCCCTGAAAAGCAAATTGGGAAAATGATACTGCTCAACCCTAGGCTTGTTAGCTACAGCATTGCAACGAAGCTGACGGAAATTGTGAACTTCCTTGCCAACCTTGGTCTCAATAAGGATGGAATGATCGGAAAAGTTATAGTCAGAGACCCATATATTATGGGTTATAGTGTCGATAAGAGGCTCCGCCCTACTTCGGAGTTTCTCAAGTCAATAGGGCTGAGTGAGGCAGATCTTCAGGCGGTGGCTGTGAACTTCCCGGCAATCTTGAGTAGAGATGTGAACAAGCTTTTGGTACCCAATTATGCATATCTAAAGAAACGTGGATTTGAAGACAGACAGATAGTTGCTTTGGTGGTTGGTTTTCCTCCTATCCTGATCAAGAGCATCCAAAATTCGTTAGAACCAAGAATCAAGTTTTTAGTAGATGTAATGGGGAGACAAGTTGACGAAGTCATTGATTATCCTTGCTTCTTTCGTCATGGTCTGAAGAGAAGAATAGAACCACGATATGTTTGCCTGGAATGGATACTGAGGGTTACTCTCCCAACTTATGAAGTGGAGTTACCAGATGAAGCAGCTTTTGTCACAGCTGCAAGGGAGCTTGGTTGA 2220 0.4613 MQNHSPSLPNLRSNGGHRAPPRPIPHDITHLLLRHSHLPFTQIPNPDLFLFNLFIRAFSLSHSPHHALSLSLQKNAIFFPTHHHPSPLTPSPSPSSSSPAPSFCFQNSAISPVRDSVSYNTVINGLVRKGRAGCSLRVITEMTQVFVEPDGYTFVAFLSACSSFEDRLIGKVVHVLVYRKLDCLGGNVLLVNVEVARRLFDQMGGRDVVSWTAMISGYCHAGCFQEALELFVQLEELRMEPDEVVAVAPLSACAWLGALELGRRIHHKYDGESWQCGYHRGFACAVVDMYAKCGSIDTALDVFVNTSDDMKTTFLYNSIVSGLAHHGRGKRLFESMLSEYGVNHQMEHYGCMIDLLSRAGHLNEAYRLIQNMLLKANAVIWRALLSACKSPFLLPRICIPHNHDHLSSNMEITSSHNSGSMMWFFKDKGFDDNSAQGMFRKCRRLEGVHQERASENWDYLRSIGIEERKLPSIVSKCPKILALDLYEKIVPTVECLRTLGTKPNEVASAIAKFPHILSNSVEEKLCPLLAFFQTLGIPEKQIGKMILLNPRLVSYSIATKLTEIVNFLANLGLNKDGMIGKVIVRDPYIMGYSVDKRLRPTSEFLKSIGLSEADLQAVAVNFPAILSRDVNKLLVPNYAYLKKRGFEDRQIVALVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEVIDYPCFFRHGLKRRIEPRYVCLEWILRVTLPTYEVELPDEAAFVTAARELG 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00498 739 Pfam mTERF 521 709 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 Pfam mTERF 417 576 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 182 330 - -
Gma10g00498 739 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 329 389 - -
Gma10g00498 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 149 IPR002885 -
Gma10g00498 739 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 329 389 - -
Gma10g00498 739 MobiDBLite consensus disorder prediction 1 23 - -
Gma10g00498 739 Gene3D Transcription termination factor 3, mitochondrial 499 735 IPR038538 -
Gma10g00498 739 SMART mt_12 436 466 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 SMART mt_12 652 684 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 SMART mt_12 616 647 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 SMART mt_12 580 611 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 SMART mt_12 543 574 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 SMART mt_12 507 538 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 SMART mt_12 685 717 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Gma10g00498 739 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Gma10g00498 739 Gene3D Tetratricopeptide repeat domain 183 282 IPR011990 GO:0005515
Gma10g00498 739 Gene3D Tetratricopeptide repeat domain 283 392 IPR011990 GO:0005515
Gma10g00498 739 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 182 330 - -
Gma10g00498 739 TIGRFAM PPR: pentatricopeptide repeat domain 209 243 IPR002885 -
Gma10g00498 739 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Gma10g00498 739 Pfam PPR repeat family 206 244 IPR002885 -
Gma10g00498 739 Pfam PPR repeat 348 373 IPR002885 -
Gma10g00498 739 Pfam PPR repeat 117 143 IPR002885 -
Gma10g00498 739 Gene3D Tetratricopeptide repeat domain 36 170 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00498 Gma-Chr10 4998085 5002699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00498 117 389 Glycoside Hydrolase AT3G49170 26.852 2.14e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gma10g00498 mTERF 2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00498 K15032 - gmx:100816929 594.349