Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00491 ATGATTACATTCATGGACACAAAGGAGAAATCAAAAGAGGTGGAGAGTTGTTTGGATCCTCAGCTATGGCATGCATGTGCAGGTGGTATTGTACAAATGCCAGCAGTGAACTCTAAGGTTTATTACTTCCCTCAGGGTCATGCTGAGCATGCATGTGGACCAGTTAACTTCAGGACTTGTCCTAAGGTTCCACCTTTTGTTCCATGTAGAGTGACTGCTGTCAAATACAGGGCTGATCCTGAGACCGATGAAGTCTATGCCAAACTCAAGCTCATTCCTCTGAATGCCAATGATGTTGATTATGATCGTGATGTTGTTGGTGGGGCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGGGGATTTTCTGTTCCTAGGTATTGTGCAGAGACAATTTTCCCTCGTTTGGACTACTCAGTTGACCCTCCCGTTCAAAACATCCTTGCCAAGGATGTTCATGGAGAAACATGGAAATTCAGACACATTTATAGGGGCACGCCAAGGCGACATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGGGACTCAATTGTGTTTTTGAGGGCAGAAAATGGGGATTTGTGTGTTGGGATTCGACGAGCGAAGAAGGGAATTTGTGGTGGACTTGAGACTTCCTCAGGGTGGAATCCTGCAGGAGGAAATTGTCATATTCCTTATGGTGGATTTTCGCCCTTTTTTAGGGAGGATGATAATAGAATCTCGAGAAATGGCAATAGCAATGGGTTAAACCCTAGTGTGAGTATGATGGGAAAGGGAAAAGTCAGGCCAGAAGCAGTTTCTGAAGCTTCAAATCTTGCAGCCAATAAGAAACCCTTCGAGGTTGTTTACTACCCTCGAGCAAGTACTCCCGAGTTTTGTGTAAAGGCCTCCCTAGTTGAAGCAGCACTACAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACAGAAGACTCCTCACGGATAAGTTGGTTTATGGGAACTATATCTTCGGCTCAGGTTGCTGATCCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCGGATTTACTTCAAAACGTGAGAAGGGTGAGCCCGTGGCTGGTTGAATTGGTGTCAAACATGCCTGCCATTCATTTTTCCCCTTTCTCACCACCACGGAAGAAATTGAGATTGCCTCAACAACCAGATTTCCCCCTTGATGGCCAGATTCCTTTGTCGACATTTCCCAGCAACCTTCTAGGTCCTAGTAACACCAACCAATTTGGTTGTCTACTTGAAAGTACACCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTCCACCTCAGTAAATTGCAGTCAGGTCTATTTTCGACTGGTTTCCCGTCTCTTGATCACGCTGCTACGCCAATGAGGGTCTCAAATAGCATAACATTACAAAAGCCCAACCTTAGTGAGAACGTCTCTTGCTTACTGACTATGGCAAATTCTACCCAGTCTTCAAAGAAATTGGATGTTGGGAAGACACCTTCGCTCGTGCTTTTTGGCCAAAAAATTCTCACTGAGCAGCAGATCTCTCCAAGTAGCTCTGGTGATACACTCTCCCCAGTTCTTACCAGAAATTGTTCATCAGATGGAAATGTCGATAAAGTGACTAATTTTTCTGATGGTTCTGGATCAGCTCTTCATCAGGAAGGTTTACGCGAACACTCCTCTTGTGAGAGGTTCCAATGGTGTAAGGATAACCACCAAGAAACTGAGGCTGGTTTGGAGATTGGTCACTGTAAAGTTTTTATGGAGTCTGAAGATGTGGGTCGGACTATGGACCTCTCGTTGCTTCGGTCTTATGATGAATTACATAGAAAGTTGGCAGACATGTTTGGCATAGAAAAATCTGAAATGTTAAGTCACGTGCTCTATCGTGATTCAACTGGGGCTGTCAAACGCATTAGTGATGAATCATTCAGTGACTTCACAAGAACAGCCAAAAGGTTGACTATTCTAATGGATTCTGGCAGTAACAACGTAGGAGTGTAG 2103 0.4479 MITFMDTKEKSKEVESCLDPQLWHACAGGIVQMPAVNSKVYYFPQGHAEHACGPVNFRTCPKVPPFVPCRVTAVKYRADPETDEVYAKLKLIPLNANDVDYDRDVVGGAETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVDPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGICGGLETSSGWNPAGGNCHIPYGGFSPFFREDDNRISRNGNSNGLNPSVSMMGKGKVRPEAVSEASNLAANKKPFEVVYYPRASTPEFCVKASLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSAQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHFSPFSPPRKKLRLPQQPDFPLDGQIPLSTFPSNLLGPSNTNQFGCLLESTPAGMQGARHAHYGLSLSDLHLSKLQSGLFSTGFPSLDHAATPMRVSNSITLQKPNLSENVSCLLTMANSTQSSKKLDVGKTPSLVLFGQKILTEQQISPSSSGDTLSPVLTRNCSSDGNVDKVTNFSDGSGSALHQEGLREHSSCERFQWCKDNHQETEAGLEIGHCKVFMESEDVGRTMDLSLLRSYDELHRKLADMFGIEKSEMLSHVLYRDSTGAVKRISDESFSDFTRTAKRLTILMDSGSNNVGV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00491 700 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Gma10g00491 700 CDD B3_DNA 117 218 IPR003340 GO:0003677
Gma10g00491 700 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Gma10g00491 700 Gene3D - 324 398 - -
Gma10g00491 700 PANTHER AUXIN RESPONSE FACTOR 6 691 - -
Gma10g00491 700 Gene3D - 116 220 IPR015300 -
Gma10g00491 700 ProSiteProfiles PB1 domain profile. 614 694 IPR000270 GO:0005515
Gma10g00491 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma10g00491 700 Gene3D - 613 698 - -
Gma10g00491 700 SMART B3_2 118 220 IPR003340 GO:0003677
Gma10g00491 700 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma10g00491 700 SUPERFAMILY DNA-binding pseudobarrel domain 112 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00491 Gma-Chr10 4885321 4890628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00491 1 700 B3 DNA Binding Superfamily AT4G30080 56.320 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma10g00491 B3 7.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00491 - - gmx:100796522 1437.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00491 10 4885321 4890628 Gma20g01687 20 44044635 44047193 ECH
Gma10g00491 10 4885321 4890628 Gma10g00491 10 4885321 4890628 ECH
Gma10g00491 10 4885321 4890628 Gma11g01633 11 17685358 17688537 ECH
Gma10g00491 10 4885321 4890628 Gma12g00677 12 5940115 5943771 ECH
Gma10g00491 10 4885321 4890628 Gma13g02897 13 43555246 43558047 ECH
Gma10g00491 10 4885321 4890628 Gma12g01641 12 36558721 36561798 ECH