Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma10g00487 | ATGCCACCGAAGTTCGATCCCTTGCAGGTGGTGGACGTGTTCGTCCGAGTCACCGGCGGCGAGGTCGGCGCGGCGAGTTCCCTCGCTCCAAAGATCGGTCCATTGGGTCTCTCCCCAAAGAAGATCGGAGAAGACATTGCGAAGGAAACCGCGAAGGACTGGAAGGGCCTCCGCGTGACGGTGAAGCTGACAGTACAGAACCGGCAGGCGAAGGTGACGGTGGTGCCCTCCGCCGCCGCGCTTGTCATCAAGGCGCTGAAGGAGCCTGAGAGGGACAGGAAGAAGACGAAGAACATCAAGCACAGCGGGAACATCTCCCTAGACGACGTCGTTGAGATCGCCAGGGTCATGAGTCCTCGCTCCATGGCCAAGGATCTCAGTGGAACCATTAAGGAGATTCTCGGGACTTGCGTTTCGGTTGGGTGCACCGTTGATGGGAAGGACCCCAAGGATCTGCAGCAGGAGATTTCTGATGGAGATGTTGAGGTTCCTCTTGAATGA | 501 | 0.5808 | MPPKFDPLQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHSGNISLDDVVEIARVMSPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLE | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma10g00487 | 166 | Hamap | 50S ribosomal protein L11 [rplK]. | 9 | 146 | IPR000911 | GO:0003735|GO:0005840|GO:0006412 | |
Gma10g00487 | 166 | PANTHER | 60S RIBOSOMAL PROTEIN L12 | 1 | 166 | IPR000911 | GO:0003735|GO:0005840|GO:0006412 | |
Gma10g00487 | 166 | PANTHER | 60S RIBOSOMAL PROTEIN L12-3-LIKE | 1 | 166 | - | - | |
Gma10g00487 | 166 | SMART | rl11c | 13 | 145 | IPR000911 | GO:0003735|GO:0005840|GO:0006412 | |
Gma10g00487 | 166 | SUPERFAMILY | Ribosomal protein L11, C-terminal domain | 76 | 149 | IPR036769 | - | |
Gma10g00487 | 166 | Pfam | Ribosomal protein L11, N-terminal domain | 15 | 69 | IPR020784 | - | |
Gma10g00487 | 166 | Pfam | Ribosomal protein L11, RNA binding domain | 75 | 144 | IPR020783 | GO:0003735|GO:0005840|GO:0006412 | |
Gma10g00487 | 166 | Gene3D | - | 82 | 164 | IPR036769 | - | |
Gma10g00487 | 166 | MobiDBLite | consensus disorder prediction | 147 | 166 | - | - | |
Gma10g00487 | 166 | SUPERFAMILY | Ribosomal L11/L12e N-terminal domain | 1 | 87 | IPR036796 | - | |
Gma10g00487 | 166 | CDD | Ribosomal_L11 | 13 | 144 | IPR000911 | GO:0003735|GO:0005840|GO:0006412 | |
Gma10g00487 | 166 | Gene3D | - | 1 | 81 | IPR036796 | - | |
Gma10g00487 | 166 | ProSitePatterns | Ribosomal protein L11 signature. | 131 | 146 | IPR020785 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma10g00487 | Gma-Chr10 | 4834976 | 4836229 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma10g00487 | 1 | 164 | Cytoplasmic Ribosomal Protein Gene Family | AT2G37190 | 87.805 | 8.07e-106 | 298 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma10g00487 | K02870 | - | gmx:100792317 | 323.168 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma10g00487 | 10 | 4834976 | 4836229 | Gma10g00487 | 10 | 4834976 | 4836229 | ECH | |
Gma10g00487 | 10 | 4834976 | 4836229 | Gma11g01641 | 11 | 17779264 | 17780128 | ECH | |
Gma10g00487 | 10 | 4834976 | 4836229 | Gma12g00671 | 12 | 5855970 | 5857308 | ECH |