Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00479 ATGCAAATGATGCCCGGTGACCCCTTTTCCTTATCCACTTCCATCGGAGGCTTCACTCAAGATCAGCAAAACACAAACCCTAACCCTAAACCTAATGCTCCTCCCAAGAAGAAGAGAAACCTTCCGGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTATCCCCGAAGACCCTCATGGCCACAAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCGTGGAAGCTAAGACAAAGGTCCAACAAAGAGGTGAGAAAGAAGGTTTATATCTGCCCTGAACAAACCTGCGTCCACCACGACCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCATTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCTCACACCAAAACCTGTGGAACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGATAGCTTCATTACTCATAGAGCGTTTTGCGATGCATTGGCTGAAGAGAGTGCGAGGCTCACAGCAGTTACAACAACAACTCTAAATTTCAAGAGTGAAGAGGGTGCTAATAATGTGATGAACTCGCAGCAGCATGGTTTGGGAGGACATGGACTAATTGGAGCACAACAAAGTCTTCAAAATGTTTCTGGCATTCCAAAATTCGGACCACATAGTTTTCGTTTGGATTTCAATGGAATGGAACAACAGCAAAGGCCAAGTTTATCACTATGGTTGAACCAGGGGAATCCCCAGATGAATCATAATAATAATAACATTAATAGCAGCAATAGTACTTCCAATGTGGGACCCAATTACATGTCAGCATGCTCTTCTTCAGGTTTGCCTGAGATTGTGCAAATGGCTCAGGCTAATGCTATGATGGGTTCTTCATCGATGGTGTCCAATTTTGGAGTTCATCATGCGGGTTCTAATAATTCAAGCAGTGCAAATCTTTCACTAGGGAAAAGAGGGGAAGCAGGTGGAAGTACTGTAGTGGACATGGCTTCTATTTATAACAACTCTGAGGGTCAAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCAACTGCGCTTCTTCAGAAAGCAGCGCAAATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTGATTAACTCACCTTCCTCCCAAACTACCAGTCTCAATAATAACAACAACAATGGTGATGCAGCCATGATGCTGGGAAGTAACACTACTACTACTACTACTGCTGCTGCAAATGCAAATGATCACTTTAGCTCATTGACGCATTCATCAAACAGTTTTGACCAACTTGTGATGCAAGTCAATGGGCAGTTGCAAAGTGAGCCAGTGAAGTTGAAGCTTCATTCTAATGCTGTGGAGAACAATTTGACAAGGGATTTTCTCGGTGTGAGTGGTGGAGGACCTCAGTACCTTCCCCAAGAGCTTGCAAAGTTTGCTTCCATAAATTCACCAATGGGGTTGATCCAATTCACTAGCAACCAATGA 1587 0.4486 MQMMPGDPFSLSTSIGGFTQDQQNTNPNPKPNAPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTAVTTTTLNFKSEEGANNVMNSQQHGLGGHGLIGAQQSLQNVSGIPKFGPHSFRLDFNGMEQQQRPSLSLWLNQGNPQMNHNNNNINSSNSTSNVGPNYMSACSSSGLPEIVQMAQANAMMGSSSMVSNFGVHHAGSNNSSSANLSLGKRGEAGGSTVVDMASIYNNSEGQNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVINSPSSQTTSLNNNNNNGDAAMMLGSNTTTTTTAAANANDHFSSLTHSSNSFDQLVMQVNGQLQSEPVKLKLHSNAVENNLTRDFLGVSGGGPQYLPQELAKFASINSPMGLIQFTSNQ 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00479 528 SUPERFAMILY beta-beta-alpha zinc fingers 64 161 IPR036236 -
Gma10g00479 528 PANTHER ZINC FINGER PROTEIN JACKDAW 7 516 IPR033243 GO:0003700
Gma10g00479 528 Gene3D Classic Zinc Finger 43 117 - -
Gma10g00479 528 Gene3D Classic Zinc Finger 120 198 - -
Gma10g00479 528 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 516 - -
Gma10g00479 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Gma10g00479 528 MobiDBLite consensus disorder prediction 1 27 - -
Gma10g00479 528 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Gma10g00479 528 MobiDBLite consensus disorder prediction 1 49 - -
Gma10g00479 528 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Gma10g00479 528 SMART c2h2final6 65 87 IPR013087 -
Gma10g00479 528 SMART c2h2final6 106 136 IPR013087 -
Gma10g00479 528 SMART c2h2final6 141 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00479 Gma-Chr10 4671943 4674047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00479 1 220 IDZ Gene Family AT5G03150 69.796 9.23e-121 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g00479 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00479 K25870 - gmx:100811274 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00479 10 4671943 4674047 Gma10g00479 10 4671943 4674047 ECH