Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00477 ATGAGCGTCATCGACATTCTAACCCGAGTCGATTCCATTTGCAAGAAGTACGACAAATACGACGTCGATAAGCACCGCGATGCTAATGTCTCTGGCGACGATGCCTTTGCCAGACTCTACGCCTCCGTCGACGCCGACATCGAGGCCCTACTTCAGAAAGCAGAAAGTGCTTCCAAGGAGAAAGGTAAGGCATCAGCTGTAGCGATCAATGCAGAGATTCGTCGTACTAAGGCTCGGTTGCTGGAGGAGGTTCCCAAGTTGCAGAGATTAGCTGTGAAAAAGGTAAAGGGGCTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCGGATAGAATCCAAGCAATACCGGATGGGGCTCCTCCTGTGCCAAAACAAACTGGAGGCTGGGCAGCTTCTGCTTCACGTCCTGAAATTAAGTTTGATTCAGATGGGCGATTTGATGATGAATACTTCCAACAAAGTGAACAATCAAATCAATTTAGGCAGGAATATGAAATGCGTAGAATGAAACAGGATCAAGGTTTGGATGTGATTGCTGAAGGATTGGATACATTGAAAAACATGGCACATGATATGAATGAGGAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCCTCTGACCTTAAGAATACAAATGTTAGACTTAAAGACACAGTGAACCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAACGTACTAAAGAAATGA 798 0.4386 MSVIDILTRVDSICKKYDKYDVDKHRDANVSGDDAFARLYASVDADIEALLQKAESASKEKGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAIPDGAPPVPKQTGGWAASASRPEIKFDSDGRFDDEYFQQSEQSNQFRQEYEMRRMKQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00477 265 SMART tSNARE_6 165 232 IPR000727 -
Gma10g00477 265 CDD SNARE_Qc 175 230 - -
Gma10g00477 265 Pfam SNARE domain 207 256 IPR000727 -
Gma10g00477 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma10g00477 265 PANTHER SYNTAXIN-73 1 261 - -
Gma10g00477 265 Gene3D - 170 231 - -
Gma10g00477 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Gma10g00477 265 SUPERFAMILY SNARE fusion complex 165 230 - -
Gma10g00477 265 Coils Coil 40 60 - -
Gma10g00477 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00477 Gma-Chr10 4651109 4654718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00477 1 264 SNARE and Associated Proteins AT3G09740 78.571 4.71e-157 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00477 K08506 - gmx:100819272 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00477 10 4651109 4654718 Gma10g00477 10 4651109 4654718 ECH