Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00476 ATGGGGCATAGACATTTATATAGCTCATCTCCAATATTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATATGGATCAACAATATGTGAACCATGGTAGTAGGAGTACCACTTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCATAGATAGCATTTCTTTTCCATCTCATTGGAACACTGCCCCAAGGTCAAACGGATATGCATCCACAAGTCTCAACATTGAAGCACCCCCTCATCAAACAGATGTATCAGGCACTTCTCATGATCATTTTCTGCCTTCATCAAGTGCTGGAATGTTTTATGCAGTGCCTGAAAATTATGTACACCAGCCTTCTAATTCTAATTATGACAGACAAGCATTTTCTGCTGCTGATGGGGGTTTTATTGATCTTACAATGGGAAATGGACGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTCCAGTCTGTGAAAGAGGCAGTACAAGCAGATATTCCAATGCTACAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCAGCCAGAGAAGCCCAATATGGATTCTCTATATATGCCTTGGGACCATGTTAATATGACACCCACATTTAGAGGTAGAGGCCTATCTATAAGGGGTGAGGGTCCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCAAATACTCATCCACACAACTCATACTCTACTGGTCTACCAATTGACCATTCTAACATGGTCGATCTTTCAACTCAAACTTCTGGCACTTTGACCAGGGATTGGAGCCCAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAGATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTATTGGAAGCAGTTCTAGTAATGCTCCTGTAGATGTTGGAGGTTTTCATAATGAATTTGGAACTAGTAGAAATCCTACTGCTCCTCAAAGTTTTCATAATAATCTGACTCAAACTGCAAGAGGAGTTCACAGTAACTACTCTCAAAGATCCACTCCAACTTTTAGGGCTTCTTCTAGCTTACGTTTGGGACGTGTGGCACCTTCTGATGATGGATTGCATATGGTGTCCGAAAGTTACTCTTCTAGACAGCCAAGGCCATTGACCACCGTTGGCTGGCAGAACAATAATAGAAATGGAAGATCAAGAATACCTAGTGACAGATATCGGTCATTGGATGATGAGGGTTTCATGATTGTTGATCGCACTTCACTGTATGGACCTAGGAATATGCTTGATCGACATAGAGACATGAGGATGGACATAGACAACATGAGTTATGAGGAACTACTTGCACTTGGAGAGAGAATAGGCCATGTGAGCACAGGATTGTCTGAGGATTTGATTTCCAAGTATTTGACAGAAACAATATACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAGCTTGTGCAATCTGCCTGGAAGAATACAAGAACATGGACGATGTCGGGACGCTGAAAGCTTGTGGACATGATTACCATGTGGGTTGCATTAGGAAGTGGTTGTCTATGAAGAAAGTATGTCCTATATGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGGCAAATAA 1623 0.4208 MGHRHLYSSSPIFEGEPDQNWNHMHMDQQYVNHGSRSTTSDNGSFIYPLENMSIDSISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLPSSSAGMFYAVPENYVHQPSNSNYDRQAFSAADGGFIDLTMGNGRGPHKRKSPGIPPVCERGSTSRYSNATNAADRPTSSELQPEKPNMDSLYMPWDHVNMTPTFRGRGLSIRGEGPLRNVRSRSALDLESNLARTHLSNTHPHNSYSTGLPIDHSNMVDLSTQTSGTLTRDWSPMSICPPHGRVSSSDANAFNHEASHFLIGSSSSNAPVDVGGFHNEFGTSRNPTAPQSFHNNLTQTARGVHSNYSQRSTPTFRASSSLRLGRVAPSDDGLHMVSESYSSRQPRPLTTVGWQNNNRNGRSRIPSDRYRSLDDEGFMIVDRTSLYGPRNMLDRHRDMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKYLTETIYCSSEQSQEEEACAICLEEYKNMDDVGTLKACGHDYHVGCIRKWLSMKKVCPICKASALPEDKKGK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00476 540 Pfam Ring finger domain 486 529 IPR001841 -
Gma10g00476 540 MobiDBLite consensus disorder prediction 375 399 - -
Gma10g00476 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 533 IPR013083 -
Gma10g00476 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 535 IPR045191 GO:0061630
Gma10g00476 540 MobiDBLite consensus disorder prediction 159 183 - -
Gma10g00476 540 MobiDBLite consensus disorder prediction 141 185 - -
Gma10g00476 540 SMART ring_2 487 528 IPR001841 -
Gma10g00476 540 ProSiteProfiles Zinc finger RING-type profile. 487 529 IPR001841 -
Gma10g00476 540 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 535 - -
Gma10g00476 540 SUPERFAMILY RING/U-box 476 533 - -
Gma10g00476 540 CDD RING-H2_TTC3 487 529 - -
Gma10g00476 540 MobiDBLite consensus disorder prediction 375 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00476 Gma-Chr10 4632821 4635130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00476 1 538 C3H Transcription Factor Family AT2G37150 41.007 1.01e-105 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00476 - - gmx:547939 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00476 10 4632821 4635130 Gma10g00476 10 4632821 4635130 ECH