Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00454 ATGCCGCCGAAGCAGCAGCAATCGAAAGCTGATTTAGCGAAGAAGCAGAAGATTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAGAACAAGAGCAAAAATGTTCAGAAGTATGTCCAGAACCTCAAGCAATCCGTGCAGCCCAGGCCCGATGCCGCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAAGATAAGGCCAAGGAGAAGGAGCTGAATGAGTTGTTCAAAATCGCTGTTACTCAGCCCAAAGTGCCAGTTGGTGTTGATCCCAAGTCCATATTATGTGAGTTTTTTAAAGTGGGGCAGTGTGCCAAGGGCTTCAAATGCAAGTTCTCGCATGATTTGAATGTTCAGAGGAAAGGGGAGAAGATTGACATTTACAGTGATAAGCGTGACGAGGAAACAATGGAGGATTGGGATCAGGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAAACCGAGTATAATCAGAATAAACCAACTGACATTGTCTGTAAATACTTTTTGGATGCAGTAGAAAAGAAGCAATATGGTTGGTTTTGGGCCTGCCCCAATGGTGGTAAGAATTGCCATTATAGACATGCTCTTCCACCTGGTTATGTTTTGAAATCTCAAATGAAGGCTTTGTTAGAGGAAGAAAGTGAAAAAATATCAATTGAAGAGGAGATTGAAAACCAGCGTGCCAAAGTGGCAACTACAACTCCTATGACTCCTGAGTTATTCTTTGAATGGAAGAAGAAGAAGATAGAAGAGAGAGATGCCAATATAGCTGCACAACAGGCAGAGAGGGCTAAGAATGATCGCATGAGTGGTCGGGAGCTATTTTTGTCAAATGCTAGCTTGTTTGTGGATGATGCAGAAGCATATGACGTGTACCAGAGAGAACCAGAATCTTATGAAACTGAACAGAATGGGAATAGGAATGCTGCTGAAGATGGCCCCTGCTCCTCAGCAACAGCTGCTTCTGATGGTGAAGATCTTGATGACATAGATGACGATGATGAGTTAGACATGGATGAGTTAGATGAATTGGAAGCAAGCTTATCCAAGACATCAATCCAAATAAAGGAAACAGGAGCTGAAGCTTAA 1089 0.4325 MPPKQQQSKADLAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRPDAAKVDAKKKKEEDKAKEKELNELFKIAVTQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDEETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWACPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKISIEEEIENQRAKVATTTPMTPELFFEWKKKKIEERDANIAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDVYQREPESYETEQNGNRNAAEDGPCSSATAASDGEDLDDIDDDDELDMDELDELEASLSKTSIQIKETGAEA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00454 362 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 361 - -
Gma10g00454 362 Coils Coil 52 74 - -
Gma10g00454 362 SUPERFAMILY CCCH zinc finger 89 114 IPR036855 GO:0046872
Gma10g00454 362 Coils Coil 247 267 - -
Gma10g00454 362 MobiDBLite consensus disorder prediction 296 338 - -
Gma10g00454 362 SMART c3hfinal6 89 115 IPR000571 GO:0046872
Gma10g00454 362 SMART c3hfinal6 159 196 IPR000571 GO:0046872
Gma10g00454 362 Gene3D - 88 204 - -
Gma10g00454 362 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Gma10g00454 362 MobiDBLite consensus disorder prediction 41 64 - -
Gma10g00454 362 MobiDBLite consensus disorder prediction 324 338 - -
Gma10g00454 362 Coils Coil 341 361 - -
Gma10g00454 362 Gene3D - 205 280 - -
Gma10g00454 362 Pfam DRG Family Regulatory Proteins, Tma46 216 295 IPR032378 -
Gma10g00454 362 ProSiteProfiles Zinc finger C3H1-type profile. 159 197 IPR000571 GO:0046872
Gma10g00454 362 Coils Coil 209 229 - -
Gma10g00454 362 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00454 Gma-Chr10 4384479 4387948 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma10g00454 DFRP_C 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00454 - - gmx:100783113 652.129