Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00444 ATGGAAGAAACAACATCAGCCATCATCATGTCAGCACTCTCCACTCTCACCCCTTCCCAATTCTCAGATCTAACTCGCTCCATTCTCTCAGCCACCAACCACCACCATCGCCGCCTCTCTTCCCTCCTCTCCTACCCCACGCTCTTCTCTCTAACCCTTCACCATCTCCACACTCTCTCCCTCCCTCAAAAAACTCTTCTTATCGCCCGCCACCTCCTCTCCTCCCTCCACCTCCTCACCGCCACGTCGCCGCATTTTTCCACCGCCACGCGGCAGCGAGACCTCGACGCCGCGCTGCTCCTCCTCCTCCTCTGCGAGACGCATAACCACAACCCGCATGCCCTCGAGGCACCGGTCTCCGAATGGAGAAAAATCTTGAGCAAACTCTTCTCTGATTCATTGTTAACTGTTTCTCTTGCACCCCTTGGGACGGTTATGATTCCCTTCGTTGAGACGGTGTCGCGGTGCTGGAGGCTCGTGGGTGCGCTGGACTGCGGCGGAGGGAAGGAGGCGGCGGAGGTGGCCGCGTCGGCGGCGACGGTGGTGGCGCTGCCGTCGGTGGAGGTGAGGCACGACGGAAGAGAGTGCGTGATATGCAAAGAGGAGATGGGAATAGGGAGGGACGTGTGCGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGTATCTTGCCATGGTTGGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTGCCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTGTGGGAAGTCTTGCTTAAAATGGCAGCAAAAGATTCATAG 795 0.5723 MEETTSAIIMSALSTLTPSQFSDLTRSILSATNHHHRRLSSLLSYPTLFSLTLHHLHTLSLPQKTLLIARHLLSSLHLLTATSPHFSTATRQRDLDAALLLLLLCETHNHNPHALEAPVSEWRKILSKLFSDSLLTVSLAPLGTVMIPFVETVSRCWRLVGALDCGGGKEAAEVAASAATVVALPSVEVRHDGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLLKMAAKDS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00444 264 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Gma10g00444 264 SUPERFAMILY RING/U-box 190 242 - -
Gma10g00444 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 243 IPR013083 -
Gma10g00444 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 260 - -
Gma10g00444 264 SMART ring_2 196 236 IPR001841 -
Gma10g00444 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 4 260 - -
Gma10g00444 264 Pfam Ring finger domain 195 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00444 Gma-Chr10 4270365 4272117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00444 1 258 C3H Transcription Factor Family AT5G02750 51.971 6.73e-81 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00444 - - gmx:100810879 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00444 10 4270365 4272117 Gma13g01150 13 25662269 25663873 GST