Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00424 ATGGTAGCAATTCTCAAGAGACAGGGAGAAAACGAATCCGAAGAAACCATCATAGGCTTGGCAAAAAGTCTCATGCAACTCTCGCGTGTCCAACAACAAAGCAATAAGCCTCTTCTCAAAACCTTTTCTCCAACGGAGTTCGAGTGCAAAACCTGTAACCGCAAGTTTTCATCTTTTCAAGCTCTTGGTGGCCACAGGGCTAGCCACAAGAAGCCCAAGTTCGAAGCTGAAGAACTCAAAGAAGAAGCCAAGAAGACTAAACCCAAAATGCACGAGTGTTCAATTTGTGGCATGGAATTCTCTCTGGGCCAGGCACTGGGGGGTCACATGAGAAAACACAGAGGTGCCATTAGTGAGAACGACAATAATAATAATAATAATGAAGCGTTGTCTTCTATAAAGCAAGCAATTGCAAAAGCTCCGGTTTTGAAACGATCGAATAGCAAGAGGGTCATGTGCTTGGAGATGGACCTGAATTTGACGCCTTTGGAGAATGACTTGAAGTTGTTGTTCGGAAACAAGGCTCCTAGAGTCGATCTTTCTTTGTAG 549 0.4408 MVAILKRQGENESEETIIGLAKSLMQLSRVQQQSNKPLLKTFSPTEFECKTCNRKFSSFQALGGHRASHKKPKFEAEELKEEAKKTKPKMHECSICGMEFSLGQALGGHMRKHRGAISENDNNNNNNEALSSIKQAIAKAPVLKRSNSKRVMCLEMDLNLTPLENDLKLLFGNKAPRVDLSL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00424 182 Gene3D Classic Zinc Finger 44 113 - -
Gma10g00424 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Gma10g00424 182 Pfam C2H2-type zinc finger 47 72 - -
Gma10g00424 182 Pfam C2H2-type zinc finger 91 115 - -
Gma10g00424 182 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Gma10g00424 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Gma10g00424 182 SMART c2h2final6 91 113 IPR013087 -
Gma10g00424 182 SMART c2h2final6 47 69 IPR013087 -
Gma10g00424 182 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Gma10g00424 182 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 5 177 - -
Gma10g00424 182 SUPERFAMILY beta-beta-alpha zinc fingers 47 113 IPR036236 -
Gma10g00424 182 PANTHER ZINC FINGER PROTEIN ZAT5 5 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00424 Gma-Chr10 4073948 4074786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00424 7 182 C2H2 Transcription Factor Family AT3G53600 43.617 1.05e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g00424 zf-C2H2_6 5.9e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00424 - - gmx:100778467 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00424 10 4073948 4074786 Gma13g01131 13 25450472 25451053 GST
Gma19g01645 19 45854282 45854971 Gma10g00424 10 4073948 4074786 PCT
Gma03g01598 03 42222034 42222860 Gma10g00424 10 4073948 4074786 PCT
Gma10g00424 10 4073948 4074786 Gma19g01645 19 45854282 45854971 PCT
Gma10g00424 10 4073948 4074786 Gma03g01598 03 42222034 42222860 PCT