Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00423 ATGGGAGCTGAGAGAGTTTTGAAGAGGTTGAACCGTTTGCTGCGGATGCTTGATCGTGTCTTGGGTTGTAGGCCCAATGGTGCTACCAAGAACAATAGCTTGGTGCTGGTTGCGCTTTACCAGGTTGTGAGGGATAGTTTTAAGCTTTATGTAGAGTTCACAATCCCAACACCACCCATTTGGGAGAATCAGAATCTAACGAGTCAATACTCAATGGCCATGAAGAGACATAGAGAGAATGAAGGAACAACATTAGAAAGCTGGGGCATGCAAAATTGTTCAATTTCAATCACACCCGACACAACAAGTGTTTCAAGTTCCACCACTTCCCCTGAAGAAGTATTTGAGTGCAAAACGTGCAACCGCAAGTTCAACTCTTTTCAAGCACTGGGTGGCCACAGGGCTAGTCACAACAAGAGGGTGGAGATGGAAGGTGAAGAACAACAACTCAAACTCAAAAACAAGGGCAAAATCTATGGGTTGGGAAAACAAAGTGAGCCCAAAATTCATAATTGCTTCATTTGTGGTCAGGGTTTTTCTCTGGGCCAGGCCTTGGGAGGACACATGAGAAGACACAGAGATGCAACCAACGATGTTTTCTCGTCCATAAACCAGGTTGTTGCTAAAGTTTCAGTTCTCAAGAGATCGTGTAATGGCAAGGTTTTCTGCTTGGACCTCAACTTAAGTCCTCTCGAGAATGACTTGAAGTTATTGCTGTTCGGGAAAGTGTCACCCAAAGTTAATCCTTCTTCCTTCTGA 759 0.444 MGAERVLKRLNRLLRMLDRVLGCRPNGATKNNSLVLVALYQVVRDSFKLYVEFTIPTPPIWENQNLTSQYSMAMKRHRENEGTTLESWGMQNCSISITPDTTSVSSSTTSPEEVFECKTCNRKFNSFQALGGHRASHNKRVEMEGEEQQLKLKNKGKIYGLGKQSEPKIHNCFICGQGFSLGQALGGHMRRHRDATNDVFSSINQVVAKVSVLKRSCNGKVFCLDLNLSPLENDLKLLLFGKVSPKVNPSSF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00423 252 PANTHER ZINC FINGER PROTEIN ZAT5 102 247 - -
Gma10g00423 252 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Gma10g00423 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Gma10g00423 252 SMART c2h2final6 115 137 IPR013087 -
Gma10g00423 252 SMART c2h2final6 170 192 IPR013087 -
Gma10g00423 252 SUPERFAMILY GAT-like domain 1 53 - -
Gma10g00423 252 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Gma10g00423 252 SUPERFAMILY beta-beta-alpha zinc fingers 114 192 IPR036236 -
Gma10g00423 252 Gene3D ANTH domain 1 56 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Gma10g00423 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Gma10g00423 252 Pfam ANTH domain 3 52 IPR011417 GO:0005543
Gma10g00423 252 Gene3D Classic Zinc Finger 113 192 - -
Gma10g00423 252 Pfam C2H2-type zinc finger 170 194 - -
Gma10g00423 252 Pfam C2H2-type zinc finger 114 139 - -
Gma10g00423 252 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 102 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00423 Gma-Chr10 4070869 4072611 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00423 100 248 C2H2 Transcription Factor Family AT3G53600 46.667 5.25e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g00423 ANTH 6.6e-09 CL0009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00423 - - gmx:100796348 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00423 10 4070869 4072611 Gma13g01130 13 25447725 25448472 GST