Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00414 ATGGGAGAGGAAGCGGATTGTGTGCATGCATTAGAAGAAGGAAAGAAGGAGAACAATGAGGAATCAAGGACGGAACTGAAGCGTGACTACGACCAATGCGTTGCTGATACTGAACCTAACGTGTCTCCTAATAAGAAACAGGCGAAAGAAGTTTCAAATGATGAAGTGCGTTCTGAGGTTTCCAACCCCAATGTTTCTGCAGCAGAGCATGCACTGACTTTTCAAGATATCAGTAGTCAACCAACTGAATCCGAAAATGTTAACCATGCGGAGTGTGGGGAACTGACGTCTACTTGCTTGGAGAATTCAAGTTCTGATGAGACCTTGAGTGATGAAGctggtgaacataataataataataataataataataataataataatacttctcaaagtgataaggacacaggtagtgctgcaatgacatcctgtgtggtgatGGAAATCCCCAAGCATGTGAGTTCATCTGGGATCAGGAAAATTACTTTTAAATTCAGTAAGAAGAAGGAGGACTATGATTACCAACCGCCTCCAGCTGTGCACCATCCTGCTCTTTATAATGATGGGAATCACATTGGCTTCCATGGGGATGATGAAGAATATTTGGCAAGGGATGATTGTAGTGGTGGGTCATTAGAAAGCCCGTGTGGAATGGGATATGTTCATGATGGAGATTTGGATTTGTACACTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTCCCCAACTGCTACCCTACAAATGTCAAAAAGCTTTTATCAACTGGCATTCTTGACGGAGCTGTAGTGAAGTATATTTACAATCCTGGAAAGGTTGAGCTACAGGGGATTATTGATGGTGGCGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTCGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAATAATCATATATTCTTAGAAAATGGAAGACCGATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTATACTAGATGAGGTTATAAAGAATGTGGCTGGTTCATCTGTCAATGAGGAGTCCTTCCAAGCTTGGAAAGAAAGTCTTCTACAAAGCAACGGCAAGGTTCAGGCTCATAAAAGTTATAGCACCAAACTTGTTGGCATGCCTCATACAAACATAAGTCAATCTGTAGAAAGTACAAGCCACTTGTCAACTTTGCACGTACCGAGTCATTATGAGCAGCACATGTATATGAATCAGACAACTGACGAATGGCGTGTGGTGAAAAAGCCAAGCTCCTACACTTCTAACACAGGTGTACTGCAGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTACACAGGTTGCTTTTTATGCCAAATGGGCTACCAGATGGTGCTGAGTTGGCTTACTATGTTAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGAAATGGTATAGTCTGTGGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGGCGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGACATAGCTCTATCGTTGGCCAATGGTCAAAACCTTACCACGGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCCAGGGCATTTCATGCAGCATGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTAGAGATAATGCCGGTAATGGAAGAGAATCTTCTATTGTGAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACACCAGAATTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGTTGCTAAATTTGATGAACGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGAGACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGGATATATGTGGCCCTACAGAATTCAGTTGCTGCTGGAGCAGAAATTATACCAGCTTCCGTGTCTGAACTAATAATCAGGAAGCATGAGGACAAGGGATTATGTACCTATGGGGCCATGAATGATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCGGAACATTTACCATTGCTTTCACGAGCTGCTGCAATTTTCCGAGAATGTTTTGATCCCATTGTTGCCATATCTGGTCGTGATCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCACTAGTCGCCACAAGCAGAGCACATCAAGGAAAAGGTTATTTTCAAGTGTTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTGATCGTAGAAAAGTTGGTGCTTCCTGCAGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGCGAAGATCAGTTATCCAAACATCTCAGAGAGGTGCAGCTAACACTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAGCTGGCTATAGAATGA 2679 0.4084 MGEEADCVHALEEGKKENNEESRTELKRDYDQCVADTEPNVSPNKKQAKEVSNDEVRSEVSNPNVSAAEHALTFQDISSQPTESENVNHAECGELTSTCLENSSSDETLSDEAGEHNNNNNNNNNNNNTSQSDKDTGSAAMTSCVVMEIPKHVSSSGIRKITFKFSKKKEDYDYQPPPAVHHPALYNDGNHIGFHGDDEEYLARDDCSGGSLESPCGMGYVHDGDLDLYTRNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYNPGKVELQGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSILDEVIKNVAGSSVNEESFQAWKESLLQSNGKVQAHKSYSTKLVGMPHTNISQSVESTSHLSTLHVPSHYEQHMYMNQTTDEWRVVKKPSSYTSNTGVLQKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCRDNAGNGRESSIVRPIMIRLTRVDKTPEFEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVAAGAEIIPASVSELIIRKHEDKGLCTYGAMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGRNVAELPLVATSRAHQGKGYFQVLFSCIERLLSSLIVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQLAIE 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00414 892 ProSiteProfiles Zinc finger PHD-type profile. 545 590 IPR019787 -
Gma10g00414 892 PANTHER AUTOIMMUNE REGULATOR 5 888 - -
Gma10g00414 892 MobiDBLite consensus disorder prediction 1 67 - -
Gma10g00414 892 MobiDBLite consensus disorder prediction 100 138 - -
Gma10g00414 892 ProSitePatterns Zinc finger PHD-type signature. 548 587 IPR019786 -
Gma10g00414 892 Gene3D - 718 885 - -
Gma10g00414 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 679 IPR013083 -
Gma10g00414 892 SMART PHD_3 547 588 IPR001965 -
Gma10g00414 892 SMART PHD_3 620 677 IPR001965 -
Gma10g00414 892 ProSitePatterns Zinc finger PHD-type signature. 621 676 IPR019786 -
Gma10g00414 892 SUPERFAMILY FYVE/PHD zinc finger 618 674 IPR011011 -
Gma10g00414 892 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 771 863 IPR016181 -
Gma10g00414 892 Pfam PHD-finger 547 588 IPR019787 -
Gma10g00414 892 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 5 888 - -
Gma10g00414 892 CDD PHD1_AIRE 547 587 - -
Gma10g00414 892 SUPERFAMILY FYVE/PHD zinc finger 543 590 IPR011011 -
Gma10g00414 892 Pfam Tify domain binding domain 277 331 IPR032308 -
Gma10g00414 892 Pfam Tify domain binding domain 481 530 IPR032308 -
Gma10g00414 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 535 613 IPR013083 -
Gma10g00414 892 MobiDBLite consensus disorder prediction 114 138 - -
Gma10g00414 892 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00414 Gma-Chr10 3984355 3993699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00414 1 887 PHD Transcription Factor Family AT3G53680 51.770 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma10g00414 TDBD 6.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00414 - - gmx:100808999 1726.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00414 10 3984355 3993699 Gma10g00414 10 3984355 3993699 ECH
Gma10g00414 10 3984355 3993699 Gma13g01119 13 25345071 25354540 GST