Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00409 ATGGCGGCGGCGTCGCGGCGGCTCCGGGACCTGCAGTCCTCGGCGGGGAACAAGATCTGCGTGGACTGCTCCCAGAAGAACCCTCAGTGGGCCTCCGTCTCCTACGGCGTCTTCATGTGCCTTGAGTGCTCCGGTAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACTCCTGGTCCGACATCCAGATCAAGAAAATGGAAGCCGGCGGCAACGACAAACTCAACGCCTTCCTCGCACAGTACTCCATCCCCAAAGAAACTGACATCGTCACGAAATATAACACCAACGCCGCTTCTGTGTACCGCAACCGGATCCAGGCCATCGCCGAGGGACGTCCCTGGCGCGATCCGCCGGTGGTGAAGGAAAACCTCTCCGCCGGAAAGGGGAAACCGCCGCTGACACAAACGCGGAGGAACAACGATTCGGGATGGGATGATTGGGGTAACGAGGGGAGTCCTCGGAGCAAGAGCATGTCGACCGGGGATTTTAGGACTCTGAATGGAGCCGGCGGAGCGCCGGCGAGGTCCAGATCCACGGAGGATATCTACACGCGGTCGCAGCTGGAGGCGTCAGCCGCGAACAAGGAGGGATTCTTCGCGCGGAAAATGGCGGAGAACGAGTCGCGGCCGGAGGGGCTGCCGCCCTCGCAGGGAGGGAAGTATGTAGGGTTTGGATCCAGCCCGACGCCGCCGCCACAGCGGCGGAATGATGCCCAAAACGATTACTTCTCTGTCGTTTCGCAGGGGATTGGGAAGTTGTCTTTTGTTGCTGCCTCTGCGGCTAATGTTGTTCAGGTTGGCACGAAGGAGTTCACTTCCAAGGTCAAGGAAGGTGGTTACGATCATAAGGTGAATGAAACTGTCAATGTTGTCACTCAGAAGACATCAGAGATTGGACAGAGGACTTGGGGCATAATGAAAGGAGTCATGGCTATGGCTTCCCAGAAGATTGAGGAGTACACTAAGGATGATCCAAACTGGAAGAATGATAACTGGCAACGAAATGAGAATGATACAAATGGTTATTATCAGGATTTTAATCGAGAGAAAAAAGGATGGAATTCTTCTACTGGAAGAGAACAATCTTCATCAGGGGAATATAAAACTGAAAGCTCAAGCTCTTGGGATGATTGGGACCACAAAGATAGCAGGAAGGAAGAACCAGCTAAAGGATCAACTCATTCATCAGGTGGGCAGTTTAGTACCTACAACTCAAGCTCTTGGGATGATTGGGAACACAAAGATTCTAGGAAGGAAGAACCTGCTAAAGGATCAGCTCCCCATAATAATGATGATTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTCGATAATATTTATGAAGGTGCTAATAAGAAAGGTGTTGGTCATAAGGGGAAATCTGATGGCACTTGGACAGAGAAAGGCTTTCTCTAA 1440 0.5264 MAAASRRLRDLQSSAGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNDKLNAFLAQYSIPKETDIVTKYNTNAASVYRNRIQAIAEGRPWRDPPVVKENLSAGKGKPPLTQTRRNNDSGWDDWGNEGSPRSKSMSTGDFRTLNGAGGAPARSRSTEDIYTRSQLEASAANKEGFFARKMAENESRPEGLPPSQGGKYVGFGSSPTPPPQRRNDAQNDYFSVVSQGIGKLSFVAASAANVVQVGTKEFTSKVKEGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMAMASQKIEEYTKDDPNWKNDNWQRNENDTNGYYQDFNREKKGWNSSTGREQSSSGEYKTESSSSWDDWDHKDSRKEEPAKGSTHSSGGQFSTYNSSSWDDWEHKDSRKEEPAKGSAPHNNDDWAGWDNAKDDGFDNIYEGANKKGVGHKGKSDGTWTEKGFL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00409 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 IPR044519 GO:0005096|GO:0016192
Gma10g00409 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 399 479 IPR044519 GO:0005096|GO:0016192
Gma10g00409 479 MobiDBLite consensus disorder prediction 379 398 - -
Gma10g00409 479 MobiDBLite consensus disorder prediction 363 378 - -
Gma10g00409 479 SUPERFAMILY ArfGap/RecO-like zinc finger 6 114 IPR037278 -
Gma10g00409 479 MobiDBLite consensus disorder prediction 399 414 - -
Gma10g00409 479 CDD ArfGap_ArfGap1 4 118 - -
Gma10g00409 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 399 479 - -
Gma10g00409 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 402 - -
Gma10g00409 479 PRINTS HIV Rev interacting protein signature 17 36 IPR001164 GO:0005096
Gma10g00409 479 PRINTS HIV Rev interacting protein signature 36 53 IPR001164 GO:0005096
Gma10g00409 479 PRINTS HIV Rev interacting protein signature 57 78 IPR001164 GO:0005096
Gma10g00409 479 SMART arf_gap_3 2 121 IPR001164 GO:0005096
Gma10g00409 479 MobiDBLite consensus disorder prediction 130 168 - -
Gma10g00409 479 MobiDBLite consensus disorder prediction 415 433 - -
Gma10g00409 479 MobiDBLite consensus disorder prediction 136 168 - -
Gma10g00409 479 MobiDBLite consensus disorder prediction 457 479 - -
Gma10g00409 479 MobiDBLite consensus disorder prediction 329 444 - -
Gma10g00409 479 Pfam Putative GTPase activating protein for Arf 6 105 IPR001164 GO:0005096
Gma10g00409 479 MobiDBLite consensus disorder prediction 457 472 - -
Gma10g00409 479 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Gma10g00409 479 ProSiteProfiles ARF GTPase-activating proteins domain profile. 5 121 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00409 Gma-Chr10 3944522 3949953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00409 6 92 C2H2 Transcription Factor Family AT4G21160 48.864 4.87e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00409 K12492 - gmx:100792658 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00409 10 3944522 3949953 Gma10g00409 10 3944522 3949953 ECH
Gma10g00409 10 3944522 3949953 Gma13g01113 13 25307131 25311747 GST
Gma19g01633 19 45731847 45735641 Gma10g00409 10 3944522 3949953 PCT
Gma03g01583 03 42101050 42105286 Gma10g00409 10 3944522 3949953 PCT
Gma10g00409 10 3944522 3949953 Gma19g01633 19 45731847 45735641 PCT
Gma10g00409 10 3944522 3949953 Gma03g01583 03 42101050 42105286 PCT