Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00399 ATGGACGACGACGACGAAGAATACCCAATTCCCGTCTCAAAGAAACCCTCCACGCAAAACGATGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAAAACCAAAACCAACGACCGTTCAGAAAACAACCGCCGACGACGGACGGCGACGGCCCCATTCCGGCGAGGGAGATTCGATCCTCCGAAGCGGAAAACTACAATAGCCAACACTTGTTCATGCAAGAAGACGAAATGGCGTCGTGGCTGCACTATCCAATCCATGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGCGCCGACATCCTCTACCCGCCGCCAAACGCCACCGCGAGCCAGAATCAAAGCAGCGCCTCCGTGCAGTCCTCCGTTCGCACGACGGAGCTCCAGCATCCGGCTCCTCGGCCTCCGATTCCGCCGCCGAGGCGGCAGGAGCATACGCTGAGCAGGATACACAATTTCACGCACTTCGCAAAGCACGGCAATGCGTCGTCGAGTTCGAAGGCGGCCGCGCCGGCGCAGCCGACGGTAGCCACGGCGGAGCACGTGGAAACCGGCCGCGCGAGCGTCAGCGCCGCCGCCGGTAAAACCCCCGCGTCGGATGGCGGGAGGGAGACGGCGACGTGCGACGTGACCGTGACGTCATCGCCTGGCGGTTCGAGCGGGAGCGCTGAACCGGTTCAGAGAGAACCAGTGGTGAACCGGAAGAGGAAGGGAAGGGAACAAGAGGAATCGGAGTATCAGAGCGAGGATGTTGATTTTGAATCTCCGGAAGCTAAAAAGCAAGTTCGTGGTTCTACATCTACGAAAAGATCTCATGCTGCAGAAGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAGAAGATGAAAGCTTTGCAAGAACTTATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATATTTCCTGGAATCCAGCAGTATATGCCACCaatgggaatggggattgggatgggtatgggtatgggcatggaaatgggaatgggaatgAACAGATCAGTAATGCCATTTCCCAATATGTTAGCTAGTTCGACTTTGCCAGCAGCAACTGCAACTGCTCATTTGGGACCAAGGTTTCCTATGCCTCCTTTCCATATGCCCCATGTTGCTACACCTGATTCATCCAGAATGCAAGGAGCAAATCACCCAGATAATAATATGCTTAACTCACTTGGTACACTAGATCCAGATCAATCATGTATCCCAAACTTCACTGATCCTTATCAACAGTACCTCAGTCTCCAACAGGCACAGTTACAATTAATGCAGACAATGAACCAACCAAATGTCAGCAAGCCTAGTACTAGTAGAGGTCAAGAGAATCCAGAAAAGCATCAGTCAGACAAAACATGA 1476 0.5 MDDDDEEYPIPVSKKPSTQNDEIMELLWQNGQVVMQNQNQRPFRKQPPTTDGDGPIPAREIRSSEAENYNSQHLFMQEDEMASWLHYPIHEDPPPFDHHDFCADILYPPPNATASQNQSSASVQSSVRTTELQHPAPRPPIPPPRRQEHTLSRIHNFTHFAKHGNASSSSKAAAPAQPTVATAEHVETGRASVSAAAGKTPASDGGRETATCDVTVTSSPGGSSGSAEPVQREPVVNRKRKGREQEESEYQSEDVDFESPEAKKQVRGSTSTKRSHAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMIFPGIQQYMPPMGMGIGMGMGMGMEMGMGMNRSVMPFPNMLASSTLPAATATAHLGPRFPMPPFHMPHVATPDSSRMQGANHPDNNMLNSLGTLDPDQSCIPNFTDPYQQYLSLQQAQLQLMQTMNQPNVSKPSTSRGQENPEKHQSDKT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00399 491 MobiDBLite consensus disorder prediction 110 132 - -
Gma10g00399 491 MobiDBLite consensus disorder prediction 107 147 - -
Gma10g00399 491 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 490 IPR031066 -
Gma10g00399 491 MobiDBLite consensus disorder prediction 210 226 - -
Gma10g00399 491 Pfam Helix-loop-helix DNA-binding domain 280 326 IPR011598 GO:0046983
Gma10g00399 491 MobiDBLite consensus disorder prediction 465 491 - -
Gma10g00399 491 Coils Coil 282 302 - -
Gma10g00399 491 SMART finulus 282 331 IPR011598 GO:0046983
Gma10g00399 491 MobiDBLite consensus disorder prediction 35 59 - -
Gma10g00399 491 MobiDBLite consensus disorder prediction 233 248 - -
Gma10g00399 491 Gene3D - 271 334 IPR036638 GO:0046983
Gma10g00399 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 340 IPR036638 GO:0046983
Gma10g00399 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983
Gma10g00399 491 MobiDBLite consensus disorder prediction 1 21 - -
Gma10g00399 491 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 490 - -
Gma10g00399 491 MobiDBLite consensus disorder prediction 163 291 - -
Gma10g00399 491 CDD bHLH_AtPIF_like 277 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00399 Gma-Chr10 3862085 3866565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00399 19 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.471 8.99e-62 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g00399 HLH 5.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00399 - - gmx:100792121 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00399 10 3862085 3866565 Gma10g00399 10 3862085 3866565 ECH
Gma10g00399 10 3862085 3866565 Gma13g01103 13 25215347 25221084 GST
Gma03g01570 03 42001615 42007907 Gma10g00399 10 3862085 3866565 PCT
Gma10g00399 10 3862085 3866565 Gma03g01570 03 42001615 42007907 PCT