Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00388 ATGCTTTTTTTGCCTTTGCGCACACTTGCTATGTCAATGTCGACTTCGCGTATCTTCCTCCTCGCTCTCCTTTTCTCTTTCTCAGTGAACTCGGTTTCTACGAATGTGCCATTTGCTTCAGCTGAACGAGCTAAAATGTGGTTAGTTAAACCTTCTTCTGGGCCATCTTTTGCTCCTGTGCAATCTCCATCTTATCAAGTTCCTATTGCGACTCCAAGACCACAACTTCCTCATTATCACCATCGTCACAACTGTGGGAAACCTTATGCTGCCGCTCCATCCCTTTCTAAAGACCAAGCTTGTAGCCAAATCTGTACAGATCCATTAACTGCAACTCCTTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTAGTACTGGATGCGGCTCCTTTGGCTGTTTTTCCAGTAATTGATGAGTTAGAGATTGAACTCAGTTCTGGAACATATTTGAAGCAGAGCCAGGTGAGGATAATGGGTGTCACTGCTGACAGTCAAAATCAGGGAAAAACCACAATTGATATTTACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACTGCAGTTCTGTTGTCTAAACGGTTTTGGCACAACGAAGTTCCTCTTAATAGGAGCCTTTTTGGTGATTATGCCATCTTGTGTATTACTTATCCAGGTAGTATACCATCGCCTCGGCCACCTGAAACCTTAACTGGGAGAGGTCACATGCCCAGGGAGAGTATTAATGTTCTTCCAATTACTGCAGACATGAACAGCGAGAATGAGAAAATGAATCTTAGAACAATAATCGTCATTGCTCTATCTTCTGTTGTACTCTTGTTGGTTTTGGTTGGAGCATTTTACATCATTTTGAAATGGAGGAAAATTAGGAGACCATCAAGTGCTGTTGGCCCTGCATTCACATCATGTCTAAACAAGAGATCTGGCATGGAATTTATGTTGTCAAGAAGAATTATGAGCTCAAGATCTATGTCTCTTGCGTCCGCTCTCGCTCATTCTATTCTCTCGGTTAAAACATTTTCCTTTTCTGAGCTTGAGAAAGCAACAACTAAGTTCAGTTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATTGTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAAGGGATGGTCAGAATGGAGACCGTGAATTTGTTGCAGAAGTTGAGATGCTAAGCCGCTTGCATCATCGTAATCTTGTGAAACTCATTGGTATATGCATAGAAGGGCCAAGGCGTTGCTTGGTTTATGAGCTTTTTCGCAATGGTAGTGTTGAGTCTCATTTGCATGGTGATGACAAGAAAAGGAGCCCTCTAAATTGGGAAGCACGGACAaaaattgcccttggatctgcaagaggattggcttatctacacgaagattctactcctcctgtaattcaccgagattttaaagctagcaatgtgttgttagaagatgactttacccccaaggtttctgattttggattagcaagaGAAGCGACCGAAGGAAATAGTCATATTTCTACAAGGGTCATGGGTACTTTTGGgtatgttgccccagaatatgcaatgacaggccatttactcgttaaaagtgatgtttatagttttggtgttgtgctgcttgagcttctgacaggcagaaaaccagtggaCATGTCTCAACCTCAGGGGCAGGAGAATCTTGTAACGTGGGCTCGCCCACTATTGAGAAGTAGAGAAGGTTTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGCTATGACTTTGATGACATGGCAAAGATGGCTGGTATTGCTTTCATGTGCGTACACCCGGAGGTCAATCAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCCACAACGACACCAATGAGAGTAACAAGGAGTCTTCTGCTTGGGCCTCGGATTTTGGAGGTGAACTTGTCTTTTCTGATAGCAGTTGGTTGGATGCTGAAGAGTTAGCCCCAAGATTAGCTTATGGACAAGCATCAACCTTAATCACAATGGATTTCAATTCTGATCATCTTGAAATGATGGAAAACAGACCGTTTTCAGCTTCAAGCTTGAATGGAGATGAGATTTCTTTGCCGATCAGGCACCGGGTTAGATCAGGCCCCTTGAGAATAGCCAAGAGTAAGCTACCATTTACTAAGCTTACTCGAAGTCAGAGTGAACGTGTGGTACATCCTTCCAAGCGTGTTTGGAATGATGATGGTTACTGGGTTTAA 2265 0.3841 MLFLPLRTLAMSMSTSRIFLLALLFSFSVNSVSTNVPFASAERAKMWLVKPSSGPSFAPVQSPSYQVPIATPRPQLPHYHHRHNCGKPYAAAPSLSKDQACSQICTDPLTATPFGSPCGCVFPMKVRLVLDAAPLAVFPVIDELEIELSSGTYLKQSQVRIMGVTADSQNQGKTTIDIYLVPLGEKFDNTTAVLLSKRFWHNEVPLNRSLFGDYAILCITYPGSIPSPRPPETLTGRGHMPRESINVLPITADMNSENEKMNLRTIIVIALSSVVLLLVLVGAFYIILKWRKIRRPSSAVGPAFTSCLNKRSGMEFMLSRRIMSSRSMSLASALAHSILSVKTFSFSELEKATTKFSSQRVLGEGGFGRVYCGTLDDGNEVAVKLLTRDGQNGDREFVAEVEMLSRLHHRNLVKLIGICIEGPRRCLVYELFRNGSVESHLHGDDKKRSPLNWEARTKIALGSARGLAYLHEDSTPPVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGNSHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSFGVVLLELLTGRKPVDMSQPQGQENLVTWARPLLRSREGLEQLVDPSLAGSYDFDDMAKMAGIAFMCVHPEVNQRPFMGEVVQALKLIHNDTNESNKESSAWASDFGGELVFSDSSWLDAEELAPRLAYGQASTLITMDFNSDHLEMMENRPFSASSLNGDEISLPIRHRVRSGPLRIAKSKLPFTKLTRSQSERVVHPSKRVWNDDGYWV 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00388 754 Gene3D Phosphorylase Kinase; domain 1 328 431 - -
Gma10g00388 754 Gene3D Transferase(Phosphotransferase) domain 1 432 650 - -
Gma10g00388 754 CDD STKc_IRAK 362 631 - -
Gma10g00388 754 Pfam Protein tyrosine and serine/threonine kinase 358 625 IPR001245 GO:0004672|GO:0006468
Gma10g00388 754 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 16 750 - -
Gma10g00388 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Gma10g00388 754 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Gma10g00388 754 ProSiteProfiles Protein kinase domain profile. 356 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00388 754 SUPERFAMILY Protein kinase-like (PK-like) 338 631 IPR011009 -
Gma10g00388 754 PANTHER OS01G0750732 PROTEIN 16 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00388 Gma-Chr10 3661049 3667882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00388 102 649 Receptor kinase-like Gene Family AT5G56890 56.316 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gma10g00388 PK_Tyr_Ser-Thr 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00388 - - gmx:100790546 1442.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00388 10 3661049 3667882 Gma10g00388 10 3661049 3667882 ECH
Gma10g00388 10 3661049 3667882 Gma13g01089 13 25010724 25018128 GST
Gma19g01614 19 45523381 45529831 Gma10g00388 10 3661049 3667882 PCT
Gma03g01559 03 41822798 41828729 Gma10g00388 10 3661049 3667882 PCT
Gma10g00388 10 3661049 3667882 Gma19g01614 19 45523381 45529831 PCT
Gma10g00388 10 3661049 3667882 Gma03g01559 03 41822798 41828729 PCT