Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00385 ATGGCTACTACTCAAGGACAAGTCATTACATGCAAAGCCGCGGTGGCCTGGGAACCCAACAAGCCATTGTCCATCGAGGACGTTCAGGTGGCGCCGCCGCAGAATGGAGAGGTCCGTATCCAAATTCTCTACACTGCTCTCTGTCACACCGATGCTTACACTTGGAGCGGCAAGGATCCAGAAGGTCTTTTCCCATGTATACTTGGTCATGAGGCTGCGGGGATTGTGGAAAGTGTAGGAGAAGGAGTTACTGCAGTTCAGCCAGGTGATCATGTCATCCCTTGTTACCAGGCTGAGTGTGGAGAGTGCAAGTTTTGCAAATCAGGCAAAACCAATCTGTGTGGCAAAGTTCGAGCCGCCACTGGAGTAGGGGTCATGCTGAGTGACCGCAAGAGTCGTTTCTCTGTTAATGGAAAACCCCTCTATCATTTTATGGGAACCTCCACATTTAGTCAATACACTGTCGTTCATGATGTTAGTGTAGCTAAGATCGATCCCAAAGCTCCTTTGGACAAAGTTTGTCTCCTTGGATGTGGTGTTCCAACTGGCCTTGGAGCTGTCTGGAACACAGCAAAAGTGGAACCCGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAGCTGTTGGTGCATCACGGATTATTGGCATAGATATTGATAGCAATAGGTTTGAAAGAGCAAAGAACTTTGGAGTCACCGAGTTCATTAATCCAAATGAACATGAGAAACCAGTTCAGCAGGTCATAGTTGAACTCACAGATGGTGGGGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTTGGTGATGAGGTCTGCCTTGGAGTGCTGCCATAAGGGCTGGGGGACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATGTACTCGACCTTTCCAATTGGTGACCGGGCGTGTATGGAAAGGAACAGCCTTTGGTGGCTTCAAGAGCCGCTCTCAGGTGCCTTGGCTTGTAGACAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCACAGTTTGAGTCTTGCGGAGATCAATAAGGCATTTGACCTCATGCATGAAGGAGGATGTCTCCGTTGTGTGCTTGCAATGAATTTCAACTCCAAACTGGTTCGATTCAGGTTCAGTTCAAAGCAGGTGTTTTGCACACCCCTTAGGGTCCACCTTACTGCAGTGTTAGCACCAAAACATCTCCCAAAGTGTGGTGTCAGAGCAGCAAAGCAACCAGCAAGAATTGTGGTCACTGAAGTCCTTCCAACAGCAATCCATCGCCCATATTTTTGGAACTAA 1332 0.476 MATTQGQVITCKAAVAWEPNKPLSIEDVQVAPPQNGEVRIQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTAVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMLSDRKSRFSVNGKPLYHFMGTSTFSQYTVVHDVSVAKIDPKAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKAVGASRIIGIDIDSNRFERAKNFGVTEFINPNEHEKPVQQVIVELTDGGVDYSFECIGNVLVMRSALECCHKGWGTSVIVGVAASGQEICTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHSLSLAEINKAFDLMHEGGCLRCVLAMNFNSKLVRFRFSSKQVFCTPLRVHLTAVLAPKHLPKCGVRAAKQPARIVVTEVLPTAIHRPYFWN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00385 443 Gene3D - 183 321 - -
Gma10g00385 443 Pfam Zinc-binding dehydrogenase 207 331 IPR013149 -
Gma10g00385 443 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Gma10g00385 443 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 4 378 - -
Gma10g00385 443 CDD alcohol_DH_class_III 9 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Gma10g00385 443 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Gma10g00385 443 SUPERFAMILY GroES-like 327 376 IPR011032 -
Gma10g00385 443 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 11 378 IPR014183 GO:0006069|GO:0008270|GO:0051903
Gma10g00385 443 SUPERFAMILY GroES-like 4 198 IPR011032 -
Gma10g00385 443 Gene3D - 14 373 - -
Gma10g00385 443 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Gma10g00385 443 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00385 Gma-Chr10 3635376 3639962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00385 1 332 Monolignol Biosynthesis Gene Families AT1G72680 25.816 3.32e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00385 K00121 - gmx:100793008 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00385 10 3635376 3639962 Gma10g00385 10 3635376 3639962 ECH
Gma19g01610 19 45476961 45480835 Gma10g00385 10 3635376 3639962 PCT
Gma03g01554 03 41782487 41785701 Gma10g00385 10 3635376 3639962 PCT
Gma10g00385 10 3635376 3639962 Gma19g01610 19 45476961 45480835 PCT
Gma10g00385 10 3635376 3639962 Gma03g01554 03 41782487 41785701 PCT