Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00384 ATGGCGCTATGGATGGAAAAGGGTTCAGAGCCATTAACCGAAAGCGAAAAAGCAGACCTTGAAGCCATTGCTGCACTCAAAGAGTCTGCTGCTTTTGAATTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGGGCAATTGATCAGAAAGCCTTGAGTGACTCTGAGACCTCTATTCTTTTTGCAAATAGAGCACATGTGAATTTGCTTCTAGGGAATCTTAGACGTGCTCTCACAGATTCTAATGAGGCCCTCAAGTTGTGCCCTTCAAATATTAAGGCAATTTATAGAGCTTCCAAGGCTTCTCTTTCGCTAGATATGTTGGCTGAAGCTAGAGAGTATTGCTTGAAGGGTCTTCAGTTTGATCCCAATAATGAGGACTTGAAGAAGCTTGACCGGCTGATAGGTCTCAAGATATCAGAGAAGGAGAAGCACGAGGCTGAATTCTCCAAGGCCGTTGCGGAGACAAAGGAACTTGCGTCTGTGATAGAACATAGAGGCTTGAAGATTGGAAAGGCAATGTATCGGGAACTTATTGGATTACGGAAACCTGTGTTGGATAAAAGTAATATCCTTCACTGGCCCGTTGTTCTTCTGTATGCAGAGGTTATGTCCAGCGACTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCGGTTCACCTTGATATGATATCCTTTTCTCTATCAAACGTATTTGCAGAAGATCAGCCGTTGTCATGGGATGTTGAAACCAACTACAAACGTGAATTTGTTGAATTATACTATGAGGCTGGTTCTGGAGTTAGTCTATCAAAGGAAAAACTTATTCATTGTCTATTAGAGGGAACTGCAGCTGCTCACAGGGAAGGTGTTGGTGATGAAGAGAAAGACACAATTGAGGATTATAAGCAACACACGGGTCCCCCTAAATGGATCAAAGTGAACGAAAGGAGAACACTCCACGATGTTCTCAAAGAGCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCAAAGCAATCCAGCTTTTATGGCAAGTTCAAAGCTGGGAAGTGGGCACCTCCAAGTATATGA 1104 0.4257 MALWMEKGSEPLTESEKADLEAIAALKESAAFEFKEKGNQYVKMGKKHYSDAIDCYTRAIDQKALSDSETSILFANRAHVNLLLGNLRRALTDSNEALKLCPSNIKAIYRASKASLSLDMLAEAREYCLKGLQFDPNNEDLKKLDRLIGLKISEKEKHEAEFSKAVAETKELASVIEHRGLKIGKAMYRELIGLRKPVLDKSNILHWPVVLLYAEVMSSDFIEDFCETDMFSVHLDMISFSLSNVFAEDQPLSWDVETNYKREFVELYYEAGSGVSLSKEKLIHCLLEGTAAAHREGVGDEEKDTIEDYKQHTGPPKWIKVNERRTLHDVLKEPNFIIPGIPVFYVVSKQSSFYGKFKAGKWAPPSI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00384 367 SUPERFAMILY TPR-like 22 165 IPR011990 GO:0005515
Gma10g00384 367 Gene3D Tetratricopeptide repeat domain 27 173 IPR011990 GO:0005515
Gma10g00384 367 Pfam Cns1/TTC4 Wheel domain 201 273 IPR044059 GO:0051879
Gma10g00384 367 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 363 - -
Gma10g00384 367 SMART tpr_5 105 138 IPR019734 GO:0005515
Gma10g00384 367 SMART tpr_5 31 66 IPR019734 GO:0005515
Gma10g00384 367 SMART tpr_5 71 104 IPR019734 GO:0005515
Gma10g00384 367 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00384 Gma-Chr10 3630136 3634486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00384 30 162 Calmodulin-binding Proteins AT3G25230 32.639 6.67e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00384 K24927 - gmx:100788789 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00384 10 3630136 3634486 Gma10g00384 10 3630136 3634486 ECH
Gma10g00384 10 3630136 3634486 Gma13g01085 13 24986322 24991159 GST