Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00379 ATGTCAACTGTGTCAAAAGATGACAACTTGGCGCTTTCTTCGGAGGACTCTTCATGCCCAGAAGAGTCTGAGCTTGAATTGGGTCTTGGGTTGAGCCTCTCCTCTGGCTCTTCATCAAAATCTCATCACCACCATCATGCTAGAATTTACACTGCTAAGGATTTTCCTTCTTCTGCAGCAGCAGCAGCAGCAGCAGCATCATCACCTTCCTCTTCTTCTTCCTCTCCCAACAACATCACTGCTGGCACCAAGAGAGCTGCTGCCGATTCTCTTGTTGCCAATAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATAGAGTGAATAGCTTCAATAGCCATGCAAAATCAACTGAAGTATTCAACTCTGTGGCTGAGAAAAGTAAGACCGATAATACTGTGGCCAGGAAGACTAATGACAATGGCAATGATAATAACATAAATGCCAAAGAGAAAAGACACCTCAGGAGTTCCCTGTTTGTCAAGGTAAATATGGATGGGATACCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTATGAAACCTTAGCGCAAACATTAGAGGATATGTTTAATGAATCAACTACAGTCACCACTTGCAAAGGATCAAATGGTGAGGATTATGGCTTTATTATCGGAGGAGAAAGGCATTCAAAATTATTAGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGGGATGTTCCCTGGGGGATGTTCTTTAGCTCAGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCGAGATTGGAAGAAAACATAAAAAAGAGATGCAAGCCCATATAG 864 0.4329 MSTVSKDDNLALSSEDSSCPEESELELGLGLSLSSGSSSKSHHHHHARIYTAKDFPSSAAAAAAAASSPSSSSSSPNNITAGTKRAAADSLVANNRPSQVVGWPPLRTYRVNSFNSHAKSTEVFNSVAEKSKTDNTVARKTNDNGNDNNINAKEKRHLRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTTCKGSNGEDYGFIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFFSSVRRLRIMRTSEANGLAPRLEENIKKRCKPI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00379 287 Pfam AUX/IAA family 40 275 IPR033389 -
Gma10g00379 287 Gene3D - 156 278 - -
Gma10g00379 287 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 278 IPR003311 GO:0005634|GO:0006355
Gma10g00379 287 ProSiteProfiles PB1 domain profile. 161 268 IPR000270 GO:0005515
Gma10g00379 287 MobiDBLite consensus disorder prediction 66 93 - -
Gma10g00379 287 MobiDBLite consensus disorder prediction 66 84 - -
Gma10g00379 287 SUPERFAMILY CAD & PB1 domains 156 264 - -
Gma10g00379 287 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 278 - -
Gma10g00379 287 MobiDBLite consensus disorder prediction 1 50 - -
Gma10g00379 287 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00379 Gma-Chr10 3596128 3599997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00379 154 275 B3 DNA Binding Superfamily AT1G59750 33.607 1.16e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma10g00379 AUX_IAA 6.7e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00379 K14484 - gmx:100527033 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00379 10 3596128 3599997 Gma10g00379 10 3596128 3599997 ECH
Gma10g00379 10 3596128 3599997 Gma13g01077 13 24915698 24919758 GST
Gma19g01595 19 45323876 45328285 Gma10g00379 10 3596128 3599997 PCT
Gma03g01541 03 41650959 41655331 Gma10g00379 10 3596128 3599997 PCT
Gma10g00379 10 3596128 3599997 Gma19g01595 19 45323876 45328285 PCT
Gma10g00379 10 3596128 3599997 Gma03g01541 03 41650959 41655331 PCT