Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00376 ATGGTGCCAACGCCGAGTCAAAAAGAAAGAGCACTTGCGGCATGTCGTGCTATGTCAAGTCTTGGAATTGATGATTTGAGAGTGAAATCAGTGTTAAAGAAACTCCTCAAAGTGTATGAAAAAAATTGGGAACTTATTGAGGCAGAGAACTATAGAGTTCTAGCAGATGCTATATTTGAGGATGACGATAAAATGGTGCCCGAACTGAAAAAGAAAAGCCAGGCAGCCAATGTACATAACGCTCGTCATTCTTTGTCTTCTTCCCTTCAAAACAACCAGGAAGCAGAGACAGAGTGTGAAGAGGCTCAGATGCATATTGAAACAGCCCGACCTTTGAAAAGGTTGCGATTACAAGGCCAAGAGAGTCAGCCTTTGCATCCTCTGGCTAACAGTGCCCCCAGCCCTCCATCAAAAAGACTTAAATTAGATGATAATGCATCTTCTAGGAAGAAGCTTCAAAACAAACCAGTGTCTTCTGATGGGAATCCAAGGATTGAAGCATGTTCACTTCCACCACAAGATTGCATTGTTGATAAGGGAAAGCAACCTGCATCACCCGAAGTTTATCATAGAGGAAGAAGACTTACATCTGAAAGAGTATCCCAATCTATACCGTCTAGAGAGCCAACAGTTGAACCTGGGAGATTTCTATTGCCAAACAACCAAATGCCCCATACTCAGACACCAATCATACCCAAGGACGAGCCTATTGATGAAATGCCTGATTACGAGATGCCCATTGCAGTGATTCCTCCTGAATCATCAAGTGTAAGGAACTGGTCAATTAAGAATGGTGTAGCTGGAAAACACAGTGGTCGTGCTACTGTGGCATCATCACAAAGCAGAGATGGAGTTGTAGATGAAGATGTTATTCGTACCTCAAATGGAGAAAGGACTTGTGATGTAGAGATAGCCTCATCAACTCTTGGAGAGGTAAAACTTTCTTTGAGCTGCAGCCCAGCTCTTTGGGGATCAGATTTTCATATGCCTAGTCAAGATCAACTTATAGAAATGATGGAGGATAAATGTCTGCAATCATATAAAATCACTGACCCAAATTTCTCTGTGAAGAATCTGTTGAGAGATATATGTGATTGCATGTTGGAATTCAGAAATGATAAGTCACAAGAGGGTTCTACGATAAGGTCCAGTGTTGATGTGTTGAAGGAACCACATGCACCTGACACACTGAGTGTGGTAGGAAATAAAGATTTGGACAGATCTTCTCACTTTTCAAACGGATCCATCAATGTTAAGTCTTCTGATGCTTTGGTTTCTCCCCGAAGTATCCTTCCTCTAGCCCACCCGAATGGTCTGAGTGATGCTGTACTGGTTTCCAAGATGGACGGAACAAATGATTTTTTGCAAAGTAATGTCAGAAAGGATCTGGAAGATCCTATGTCTCCAAATTCACAAAGTTTAGTGTTTGTTCCACAGCATCAGCTTACAGTTGGTGATATAAGGTCTTTTCATGATGCTAATGACCTTACAAAAGGAGAAGAAAATGTTGAAATTCCATGGGTGAACGAAACTACTAGTGATTTCGCACCATCTTTTAACTACATACCCCAAAACCTTGTGTTCCAAGATGCTTATGTTAATATTTCTCTATCACGTATTGGTGGTGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTCTTGTCTACTACCTGTGCTTGTGCAAATAAAACTGGTGGTAAATTTGCATACAATACTGAGGGCCTACTGAAGGAAGAATTCTTGGAAGAGTGCATTGCAATCAGTCGCAACCCTCAACAACATTTCTACTATTGCAAAAATTGTCCACTTGAAAGATCCAAGAATGATGGTTGTTTAGAACCGTGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAATGTTGGAGCAAATGTGGTTGTGGGAAACAGTGTGGAAATCGGGTTATCCAGCGAGGAATAACTTACAATTTGCAGGCATTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGACCTGCCAAAAGGTGCATTTGTGTGCGAGTTTGTTGGAGAAATATTATCCATTAAAGAGTTGCATGAGAGGAGCATGAAATGCACTGAAAATGGGAAATATACATACCCAGTTCTACTGGATGCAAATTGGGATTCAGGATATGTGAAGGACGAAGAAGCTTTATGCTTGGATGCAGCTTCTTTTGGAAACACTGCTAGGTTTATCAATCACAGATGTTCTGATGCAAACTTGATTGAGATCCCTGTTGAAGTTGAGGATCCTGGTCATTATTACTATCACTTTGCCTTTTTCACTTCAAGAAAAATAGCAGCGCAGGAGGAGCTAACATGGGATTATGGCATTGACTTTGATGACCATGATCATCCTGTCAAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAACATGAAGAGATCAAGCAGATCTTTTAGATCTTCGTCAATTGCAGGATGA 2466 0.41 MVPTPSQKERALAACRAMSSLGIDDLRVKSVLKKLLKVYEKNWELIEAENYRVLADAIFEDDDKMVPELKKKSQAANVHNARHSLSSSLQNNQEAETECEEAQMHIETARPLKRLRLQGQESQPLHPLANSAPSPPSKRLKLDDNASSRKKLQNKPVSSDGNPRIEACSLPPQDCIVDKGKQPASPEVYHRGRRLTSERVSQSIPSREPTVEPGRFLLPNNQMPHTQTPIIPKDEPIDEMPDYEMPIAVIPPESSSVRNWSIKNGVAGKHSGRATVASSQSRDGVVDEDVIRTSNGERTCDVEIASSTLGEVKLSLSCSPALWGSDFHMPSQDQLIEMMEDKCLQSYKITDPNFSVKNLLRDICDCMLEFRNDKSQEGSTIRSSVDVLKEPHAPDTLSVVGNKDLDRSSHFSNGSINVKSSDALVSPRSILPLAHPNGLSDAVLVSKMDGTNDFLQSNVRKDLEDPMSPNSQSLVFVPQHQLTVGDIRSFHDANDLTKGEENVEIPWVNETTSDFAPSFNYIPQNLVFQDAYVNISLSRIGGEDCCSTCMGNCVLSTTCACANKTGGKFAYNTEGLLKEEFLEECIAISRNPQQHFYYCKNCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQAFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILSIKELHERSMKCTENGKYTYPVLLDANWDSGYVKDEEALCLDAASFGNTARFINHRCSDANLIEIPVEVEDPGHYYYHFAFFTSRKIAAQEELTWDYGIDFDDHDHPVKLFQCRCGSKFCRNMKRSSRSFRSSSIAG 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00376 821 Gene3D - 2 64 IPR043017 -
Gma10g00376 821 Coils Coil 85 105 - -
Gma10g00376 821 Pfam SET domain 661 782 IPR001214 GO:0005515
Gma10g00376 821 Pfam Ubiquitin-binding WIYLD domain 6 64 IPR018848 GO:0018024
Gma10g00376 821 ProSiteProfiles Pre-SET domain profile. 541 646 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma10g00376 821 SUPERFAMILY SET domain 488 790 IPR046341 -
Gma10g00376 821 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 9 312 - -
Gma10g00376 821 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 380 818 - -
Gma10g00376 821 Pfam Pre-SET motif 497 641 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma10g00376 821 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 821 IPR025776 -
Gma10g00376 821 SMART set_7 649 788 IPR001214 GO:0005515
Gma10g00376 821 SMART preset_2 493 633 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma10g00376 821 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 380 818 - -
Gma10g00376 821 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 9 312 - -
Gma10g00376 821 CDD SET_SETDB-like 517 782 - -
Gma10g00376 821 MobiDBLite consensus disorder prediction 123 231 - -
Gma10g00376 821 Gene3D SET domain 484 808 IPR046341 -
Gma10g00376 821 ProSiteProfiles SET domain profile. 649 782 IPR001214 GO:0005515
Gma10g00376 821 MobiDBLite consensus disorder prediction 72 102 - -
Gma10g00376 821 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00376 Gma-Chr10 3573689 3579532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00376 625 807 C2H2 Transcription Factor Family AT2G23740 40.212 3.48e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma10g00376 Pre-SET 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00376 - - gmx:100787369 1649.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00376 10 3573689 3579532 Gma10g00376 10 3573689 3579532 ECH
Gma10g00376 10 3573689 3579532 Gma13g01073 13 24886508 24891815 GST
Gma19g02332 19 51949338 51953259 Gma10g00376 10 3573689 3579532 PCT
Gma03g02296 03 48184397 48190811 Gma10g00376 10 3573689 3579532 PCT
Gma10g00376 10 3573689 3579532 Gma19g01589 19 45272266 45279277 PCT
Gma10g00376 10 3573689 3579532 Gma03g01534 03 41595357 41602416 PCT