Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00374 ATGTCGAAGCGTGGTCGTGGTGGTTCGGCGGGGAACAAGTTCCGCATGTCGCTGGGTCTTCCAGTGGCGGCGACGGTGAACTGCGCCGACAACACGGGGGCGAAGAACCTCTACATCATTTCGGTGAAAGGGATCAAAGGCCGTTTGAACCGTCTTCCCTCGGCCTGCGTTGGCGACAtggtgatggccaccgtgaagaagggaaaacccgatctgaggaagaaggtcttgccagcTGTCATCGTTCGCCAGCGCAAGCCATGGCGCCGAAAGGACGGCGTCTACATGTACTTCGAAGATAATGCTGGTGTTATTGTCAATCCCAAGGGAGAAATGAAAGGTTCTGCTATCACTGGTCCCATTGGAAAAGAGTGTGCTGATTTGTGGCCTAGGATTGCAAGTGCAGCTAACGCCATCGTTTGA 423 0.4704 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00374 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Gma10g00374 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Gma10g00374 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gma10g00374 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gma10g00374 140 PANTHER 60S RIBOSOMAL PROTEIN L23 1 140 - -
Gma10g00374 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Gma10g00374 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Gma10g00374 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00374 Gma-Chr10 3567042 3568415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00374 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.857 7.48e-99 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00374 K02894 - tcc:18613077 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00374 10 3567042 3568415 Gma10g00374 10 3567042 3568415 ECH
Gma10g00374 10 3567042 3568415 Gma13g01071 13 24881388 24882733 GST
Gma19g01588 19 45268491 45269985 Gma10g00374 10 3567042 3568415 PCT
Gma03g01533 03 41591704 41593152 Gma10g00374 10 3567042 3568415 PCT
Gma10g00374 10 3567042 3568415 Gma19g01588 19 45268491 45269985 PCT
Gma10g00374 10 3567042 3568415 Gma03g01533 03 41591704 41593152 PCT