Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00360 ATGGAGCATGTGATTGGTGGCAAGTTTAAATTGGGAAGGAAAATTGGTAGTGGGTCTTTTGGGGAGCTCTATTTAGCTGTCAATGTACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAACCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAACTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTTATCGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAATCGGAAGTTCACATTGAAGACAGTGTTAATGCTTGCGGATCAATTGATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCGGACAATTTTCTAATGGGTCTAGGACGAAAGGCAAATCAAGTGTATGCCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTACGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAAAGGAAGTCTTCCCTGGCAAGGACTGAAAGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGACAAAGGTGTCAACTCCCATAGAGGTGCTCTGCAAATCATATCCGTCTGAGTTTGTATCATACTTCCGCTATTGCCGATCACTGCAGTTTGAGGACAAGCCAGATTATTCGTATTTAAAGAGACTTTTCCGAGACCTATTTATTCGAGAGGGGTACCAGTTTGATTACATTTTTGACTGGACTATGTTAAAGTATCCACAGATCAGTGGCAGCTCCAGAGGGAGGCATGTCACTGGCAAGGCAGCTATGCATGCAGGTCCACATGTACAAAAAGCAGAAAAGATCTCAGTTGGGAAAGAAATTCGAGAGAAATTTTCTGGTGCAGTTGAAGTGTTCTCCTGGAGGAACCCTGCAAATGCTAGTCCTCGTGGTGATCACACCAAACATAGAAGTTTTGAGGATGCACCAGTGCAAAAGGATTTGCACTATGCGCAACACAATTCCACTCGATATGGCAGCAGTTCAAGAAGAGCCATGATCTCATCGAACAGGCCAATATCCTCAGGTGACCATACTGGCAGGCAAACCATAACTGGGAGCCGTCCATCTGGTGCTCACAGAGTTCAACCAGTGTATGACACCAAACAAGCAACTTATACGCATGGTGGCTCTATAAGAGGCCGTGATGATCCTCTGCGGAACTTTGAGCTCCTCAATATCAGGAAGTAA 1359 0.4378 MEHVIGGKFKLGRKIGSGSFGELYLAVNVQTGEEVAVKLEPVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLKGSLPWQGLKAGTKKQKYDKISETKVSTPIEVLCKSYPSEFVSYFRYCRSLQFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTMLKYPQISGSSRGRHVTGKAAMHAGPHVQKAEKISVGKEIREKFSGAVEVFSWRNPANASPRGDHTKHRSFEDAPVQKDLHYAQHNSTRYGSSSRRAMISSNRPISSGDHTGRQTITGSRPSGAHRVQPVYDTKQATYTHGGSIRGRDDPLRNFELLNIRK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00360 452 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00360 452 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Gma10g00360 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gma10g00360 452 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 437 - -
Gma10g00360 452 PANTHER CASEIN KINASE-RELATED 1 437 - -
Gma10g00360 452 MobiDBLite consensus disorder prediction 372 413 - -
Gma10g00360 452 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gma10g00360 452 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00360 452 MobiDBLite consensus disorder prediction 365 421 - -
Gma10g00360 452 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00360 452 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gma10g00360 452 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00360 Gma-Chr10 3460882 3470424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00360 5 219 EF-hand Containing Proteins AT3G50530 26.104 1.40e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gma10g00360 Pkinase 2.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00360 K08960 - gmx:100783824 928.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00360 10 3460882 3470424 Gma10g00360 10 3460882 3470424 ECH
Gma10g00360 10 3460882 3470424 Gma13g01058 13 24745235 24752469 GST
Gma19g01571 19 45118564 45124110 Gma10g00360 10 3460882 3470424 PCT
Gma03g01515 03 41416436 41422152 Gma10g00360 10 3460882 3470424 PCT
Gma10g00360 10 3460882 3470424 Gma19g01571 19 45118564 45124110 PCT
Gma10g00360 10 3460882 3470424 Gma03g01515 03 41416436 41422152 PCT