Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00357 ATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACGCAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCCAACCTACTTGAAAGGGATCATGCCTTTGATGATCCAGATTATGGAAATCCAAAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAAAGTTTGGAAGGAACAGGATCACCATGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACAACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATAGATGAATTTAATGATTCAAGTGAAATATTTATTTTCATTTTAACAACCAAAGTTGGGGGGTTGGGGACGAATCTTACAGGTGCAAATAGGGTGATCATCTATGACCCTGACTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTACAGGTTGATTACGCGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAACAGAAAAGTCAAATATCTGAAGAAGCCAATATCATTGGGACACACAAAGAAAATAAGGATAAGTATAAACATAGCCAACCTGCTGAACTGGATTCTGAAGATGTTGCAGTTGGTAATGATGACAAATCAGAGAGAGGTTCTTTAAGAGGAAAGGGGAAAGAGAAGGTTGAACATAATAGTAATAAGGTTGATGAGGAAACAAATATATTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCAGGATGAGGAGAAGATGAGACTTGAGGAGCAAGCATCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGGTCCGAAGCCATGATAGCAAAGCATCTAACGAATTACCCAACAAGGGAACTAACAAGATCAATGGATTTGCTGCTGGGGAATCTTCTGGTAAAGCATTATCTTCCGCCGAACTATTGGCTCAAATTCGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTTGAACATCAGTTTGGTGTGTTGTCAAGTTCCACTAATCAAGCAAGATCTGTAGATGCTAGATCTTCCATGGCTACTGAAAATTCATCCGTACAACCTGAAGTATTGATTCGGAAAATCTGTACTTTTATACAACAACGAGGTGGTAGTTCCGATTCAGCCAGCATAGTTCAGTATTTCAAGGACCGTATTCCCTCAAAAGATGTTGTGCTGTTTAAGAATCTGTTAAAGGAAATTGCTACTCTGCATAAAGGATCAAATTGGGTTCTGAAACCAGACTACCAATTCTGA 1533 0.4038 MPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEQILDGRRNSLYGIDVMRKICNHPNLLERDHAFDDPDYGNPKRSGKMKVVAQVLKVWKEQDHHVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNDSSEIFIFILTTKVGGLGTNLTGANRVIIYDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKSQISEEANIIGTHKENKDKYKHSQPAELDSEDVAVGNDDKSERGSLRGKGKEKVEHNSNKVDEETNILKSLFDANGIHSAMNHDLIMNAQDEEKMRLEEQASQVAQRAAEALRQSRMVRSHDSKASNELPNKGTNKINGFAAGESSGKALSSAELLAQIRGNQEKAIGAGLEHQFGVLSSSTNQARSVDARSSMATENSSVQPEVLIRKICTFIQQRGGSSDSASIVQYFKDRIPSKDVVLFKNLLKEIATLHKGSNWVLKPDYQF 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00357 510 MobiDBLite consensus disorder prediction 358 378 - -
Gma10g00357 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 94 253 IPR001650 -
Gma10g00357 510 PANTHER SNF2/RAD54 FAMILY MEMBER 1 411 - -
Gma10g00357 510 Pfam Helicase conserved C-terminal domain 96 203 IPR001650 -
Gma10g00357 510 Gene3D - 13 310 IPR027417 -
Gma10g00357 510 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 1 411 - -
Gma10g00357 510 CDD SF2_C_SNF 89 214 - -
Gma10g00357 510 MobiDBLite consensus disorder prediction 259 302 - -
Gma10g00357 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 263 IPR027417 -
Gma10g00357 510 Coils Coil 331 358 - -
Gma10g00357 510 Pfam SNF2-related domain 2 71 IPR000330 GO:0005524|GO:0140658
Gma10g00357 510 SMART helicmild6 120 203 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00357 Gma-Chr10 3430949 3433271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00357 110 253 RAD5 or RAD16-like Gene Family AT5G05130 37.671 4.33e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma10g00357 Helicase_C 5.6e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00357 K10841 - gmx:100820025 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00357 10 3430949 3433271 Gma10g00357 10 3430949 3433271 ECH
Gma10g00357 10 3430949 3433271 Gma13g01054 13 24703839 24711656 GST