Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00353 ATGGGTCTTAGAGACATTGGTGCTTCACTGCCCCCAGGGTTTCGGTTTTACCCGAGTGATGAGGAGTTGGTCCTTCATTACCTTTACAAAAAGATCACTAATGAGGAAGTTCTGAAGGGTACCTTGATGGAAATTGACTTGCACACGTGCGAGCCATGGCAACTCCCAGAGGTGGCTAAGCTCAATGCAAACGAATGGTACTTCTTCAGCTTCCGTGACCGTAAATATGCAACCGGCTTTCGGACCAATCGCGCGACGACATCTGGCTACTGGAAAGCAACGGGGAAGGATCGTACGGTGTTTGACCCTGCCACGCGTGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTACAGGAACAGGGCTCCAAATGGCATCAAAACGGGTTGGATCATGCATGAGTTTCGCTTGGAGACGCCACATTTGCCACCTAAGGAGGACTGGGTTTTGTGTAGAGTGTTTCACAAGGGCAAAGCAGACAACAGTGCCAAACTCATCATGTACGAGAGCACAGTTCCATCCCTAACTTTGGCTTCGTCATCTCCAACCAACCAAAACACCACACCATCAATTGGGTATAACCAATTTCTTGCCCCATTCTCTTCCTCAATGGCAACCCATCATCACAATCACAATCATCATATTCCAAACCAAAGCCAAAACAACAACAACAACTCCTTGATGGGTCTCCTTCAGTTCTCTAGGGAAACAAACACCAACAACTCTAGCACCGTTACTCAAATTAGTCCCAAATGTGATGATAATAATGGATATGGGTTCTTATGGGACATGGACCTCGAAGAAAATAGCTTCAATGATGGCGTGGCATCAAACTTGGATGGAATGAGATTCTTCGAGCTTGATAATAATAATAGTGTGGGGGCAAGTCACGTGCTTGGATTGGGATCGGTTGTTCCATGGTTGGGGTCTGCTGTTCAAGGGTCAACTTCTGCTAGTACTTCTCAAAATGCTGCTAATGAAGATCTCAGGAGGAAGCTTGAACACTTTCAATCAAAAGTCAAGGAATCTCTTGCAGTTCTTAAGCCTCATTTTAACCATGAAAGTCCAGTCACTGCAATTGCTACAATTCAAGGGTTAGAAGTACTGGGAACTATGGACCTCAATGCACCACTAAGGGATGAAACACTTCCACAACAAGAGGAGCTGCCATCACCGCAGCCACCAGTGCAGTAG 1194 0.4623 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPATREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHLPPKEDWVLCRVFHKGKADNSAKLIMYESTVPSLTLASSSPTNQNTTPSIGYNQFLAPFSSSMATHHHNHNHHIPNQSQNNNNNSLMGLLQFSRETNTNNSSTVTQISPKCDDNNGYGFLWDMDLEENSFNDGVASNLDGMRFFELDNNNSVGASHVLGLGSVVPWLGSAVQGSTSASTSQNAANEDLRRKLEHFQSKVKESLAVLKPHFNHESPVTAIATIQGLEVLGTMDLNAPLRDETLPQQEELPSPQPPVQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00353 397 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 290 - -
Gma10g00353 397 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Gma10g00353 397 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Gma10g00353 397 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Gma10g00353 397 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Gma10g00353 397 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 290 - -
Gma10g00353 397 MobiDBLite consensus disorder prediction 207 226 - -
Gma10g00353 397 Coils Coil 326 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00353 Gma-Chr10 3372470 3383059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00353 6 256 NAC Transcription Factor Family AT1G56010 43.629 1.92e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma10g00353 NAM 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00353 - - gmx:100783645 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00353 10 3372470 3383059 Gma10g00353 10 3372470 3383059 ECH
Gma10g00353 10 3372470 3383059 Gma13g01051 13 24648932 24653702 GST
Gma19g01567 19 45035334 45050444 Gma10g00353 10 3372470 3383059 PCT
Gma03g01511 03 41343173 41359858 Gma10g00353 10 3372470 3383059 PCT
Gma10g00353 10 3372470 3383059 Gma19g01567 19 45035334 45050444 PCT
Gma10g00353 10 3372470 3383059 Gma03g01511 03 41343173 41359858 PCT