Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00351 ACAGATACTACTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGTCAAACAATGAAACCTATGCCCTTTCAGAACATCTGTAATAATATGGTTGGGGTGTTAAAGCGCTTGAAACCGGTGCTTGATGACATTATGGATTACCAAATCCCTTCAAATGTAAATCTATGTAAAGAGTGTGAGGAATTGGATATGCAGGTTAATGAAGCTAGGGATTTCATTGAAAAATGGAGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAGGTGGTACTTTGTTGATCAAGTTACAGAGCACCTCTCTAGATATCTGTCACATGATAGTTAAATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTTCAGCACTATATCCAGGAACTTCAGTGTTTCAAGAAGGAAATGGCTATGGTCTTCATAGAAGAAGCACTAAGAAACCAAAGAGATAATGTTGAACTTTGCACGGAGCATCTCAAGGAAATTATTGAGTTACTTAAATTGACATCAAATCAGGAGCTCTTAAGAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGAAGGGGGACTTGGAAGAACTTGATGATATTGTGATTCTTGTCTGTAATTTGCGTGATTATGTGATGAAAACTGAGTGTCCTGTAGTCAAGAGTGGTCTGTTAATCCCTCTATACTTCCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTCATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAAACTCGTCAGAGACTTACTCCTACAAATCTCATTCCTAATTATACTGTCAAAGCTATGATAGCAACTTGGTGTGAGGAAAATAATGTCAAACTTTCTGGTAACTCTGAGCAAAATAATTCTGCCTGTATCACATCCCCCTCGGACCATTTATTGCCTCAAGATTTAACTCATGATTGTTGTGTTGAGTCTTTACCTAGTAGCAATTCCATTTCAAGATCAGCTCTGCAAACTGAAAATGCATTTGAAAAGCAAAAGGGTGATAACTCTTTAAGATTGTGCGAAGAATACAATGGATGCCAGAGTGGAGCAATTGAAAAGTGTGAGCAACAGTCCCCATATACTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTACTGATTGTGCGCATGCAGTTTCAAAAGAGGTGTCAGGGATATCCAATAAGCTTCAAAATGTGAAGGTACTGTCTGGAGAAATCACAAAGGTGTGTCCTCCTTCTCCTGGTAACAAACAATCAGGGATCTCTCCGTGGTTATCTGGAGCGCAATTTCAAAGCCCTGGATCAAATGTGGGAGTGTTGGAGAATGGAAATAATAATAATAGTCATTCAAGATTTGATTCCCATCCTGTTTTCAACTCCGGGTCGGATGAATTAACCACCTCATCTCATGTTATTAGATTGATTGAAGACCTTCACAGCCAATCAATTGAAACGCAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACAAAGCATAACAAGGAAAACCGTATCATTGTTGGGCAGTATGGGGCTGTTGCACCTTTGCTTTCACTGTTATATTCAGACTTGCAGGTAACACAAGAGCATGCTGTTACAGCTCTGCTGAATTTATCAATTAATGAAGACAACAAGGCCTTGATCATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTAAGTACAGGAAATGATAGTGCCAAGGAGAATTCTGCGGCAACTATATTCAGCCTCTCAATAATTGAGAACAATAAAGCAAGAATTGGCCGTTCTGGAGCAGTTAAAGCTTTGGTGGATCTTCTTGCCTCAGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTCTATTTAACCTGTCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCGGTGAAGTTTCTGGTTTGGTTAATGGACCATGCTGAAGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAACCTGTCAACAATTCCAGAGGGCCGATTAGAAATTGCAAGGGAAAGGGGCATCCCCTTACTAGTTGAAATTGTTGAGTATGGTTCACAGAGGGGAAAAGAAAATGCAGCCTCCATTCTCTTGCAATTATGCCTTCATAGTTCTAAGTTCTGTACTCTGGTTTTGCAAGAAGGAGCTGTCCCTCCCCTGGTGGCATTATCGATATCCGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGCCATTTTCGTAATCAACGGGAAGCAGCTACTACTGGGAAAGGGAAATCATGA 2358 0.4059 TDTTSVKCLINSISRFIHLVSCQTMKPMPFQNICNNMVGVLKRLKPVLDDIMDYQIPSNVNLCKECEELDMQVNEARDFIEKWSPKMSKIHSVLQGGTLLIKLQSTSLDICHMIVKSLQSPPSASVLANLQHYIQELQCFKKEMAMVFIEEALRNQRDNVELCTEHLKEIIELLKLTSNQELLRESIAVEKERLNAEVNKMKGDLEELDDIVILVCNLRDYVMKTECPVVKSGLLIPLYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTPTNLIPNYTVKAMIATWCEENNVKLSGNSEQNNSACITSPSDHLLPQDLTHDCCVESLPSSNSISRSALQTENAFEKQKGDNSLRLCEEYNGCQSGAIEKCEQQSPYTHSRSESFSSSISSTDCAHAVSKEVSGISNKLQNVKVLSGEITKVCPPSPGNKQSGISPWLSGAQFQSPGSNVGVLENGNNNNSHSRFDSHPVFNSGSDELTTSSHVIRLIEDLHSQSIETQTAAAEELRLLTKHNKENRIIVGQYGAVAPLLSLLYSDLQVTQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLSTGNDSAKENSAATIFSLSIIENNKARIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVWLMDHAEGMVDKAVALLSNLSTIPEGRLEIARERGIPLLVEIVEYGSQRGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSISGTPRAKEKAQQLLSHFRNQREAATTGKGKS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00351 785 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 621 663 IPR000225 GO:0005515
Gma10g00351 785 SUPERFAMILY RING/U-box 236 310 - -
Gma10g00351 785 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Gma10g00351 785 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Gma10g00351 785 PANTHER U BOX DOMAIN-CONTAINING 6 779 - -
Gma10g00351 785 Pfam U-box domain 236 307 IPR003613 GO:0004842|GO:0016567
Gma10g00351 785 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 310 IPR013083 -
Gma10g00351 785 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 662 703 IPR000225 GO:0005515
Gma10g00351 785 Gene3D - 488 780 IPR011989 -
Gma10g00351 785 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Gma10g00351 785 SMART arm_5 569 609 IPR000225 GO:0005515
Gma10g00351 785 SMART arm_5 651 690 IPR000225 GO:0005515
Gma10g00351 785 SMART arm_5 691 731 IPR000225 GO:0005515
Gma10g00351 785 SMART arm_5 528 568 IPR000225 GO:0005515
Gma10g00351 785 SMART arm_5 610 650 IPR000225 GO:0005515
Gma10g00351 785 CDD RING-Ubox_PUB 240 282 IPR045210 -
Gma10g00351 785 Coils Coil 184 211 - -
Gma10g00351 785 Pfam Armadillo/beta-catenin-like repeat 528 567 IPR000225 GO:0005515
Gma10g00351 785 Pfam Armadillo/beta-catenin-like repeat 569 608 IPR000225 GO:0005515
Gma10g00351 785 Pfam Armadillo/beta-catenin-like repeat 613 649 IPR000225 GO:0005515
Gma10g00351 785 SUPERFAMILY ARM repeat 501 771 IPR016024 -
Gma10g00351 785 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 6 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00351 Gma-Chr10 3337413 3341083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00351 2 785 U-box Gene Family AT3G54790 53.759 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00351 - - gmx:100800949 1503.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00351 10 3337413 3341083 Gma10g00351 10 3337413 3341083 ECH