Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00349 ATGCCGTCGCTACTCTCCCCGGGCAAAATCCACTGCCTCGAGGTAGAGAATTTCAAGTCCTACAAGGGCTTCCAAGTGATCGGTCCCTTCTACGACTTCACCGCCATCATCGGCCCCAACGGCGCCGGCAAGTCCAATCTCATGGACGCCATCAGCTTCGTCCTCGGCGTCCGCACTGGCCAGCTCCGCGGCGCGCAGCTCAAGGACCTCATCTACGCCTTCGACGACCGCGAGAAGGAGCAGAAAGGCCGCAGAGCCTTCGTCCGCCTCGTCTACCACCTCGCCAACTCCACCGAGATCAAGTTCACCCGCACCATCACCAGCGCCGGCGCCAGCGAGTACCGCATCGACGAATCCCTCGTCAATTGGGAGACCTACAACAGCAGACTCAAGTCCCTAGGCATTCTCGTCAAAGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAGTCTATTGCATCGAAGAATCCCAAAGAGCTCACTGCACTGGTGGAGCAGATATCCGGCTCTGACGAGTGCAAGAGGGACTATGAGCAGTTTGAGGAGGAGAAAGGTGCTGCTGAGGAAAAATCAGCGCTTGTTTATCAGAAAAAGAAGACAGTGGTTATGGAGAGAAAACAGAAGAAAGAACAGAAGGAAGAAGCAGAGAAGCATCTCCGCCTGCAACAAGAACTGAAATCTATGAAGGGAGAACATTTCTTGTGGAAGTTGTTTAATATACACAACGATTATGCTGAAACAATTAAGGATCTTGAAGATGAGGAAAAAAGCCGTGAAGGTGTTGTTAAAGAGCTAGAATACTTTGAAAGTGAAGCTAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTGAAAGAGATTGCACTACGTGAAAAGAGAATTGCTGAGAAAGGCAACAAGCTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATAACTTCAAAAATTAAAAAAGGGAAGAAAGAGCTTGATAAAAAAAAGGTTGAACGGAAGAAGCATGATGCTGATATAGCATTACTACAGAATGACATCCAGGATCTTACAGCAAAAATGGCAGACCTTCAGGAAAAGGGACGAGATGTTGATGACGAGCTTGATTTGCAAGGCAATGACTTGGAAGAATATTTTCGCATCAAAGAGGAAGCTGGAATGAAAACTGCAAAGCTTAGAGAGGAAAAGGAGCTTCTAGATAGGAAACTTAACGCTGATAGTGAAGCTCAAAAGAACTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCGCAGGAAGAACAGATGCGAGCAAGGCTTGAAAAAATTCTTGATAATTCTGCAAAAAATAAAGTTGGCCTTGAAAACTTGAAAAAAGAACTACGCGTGATGCAGGACAAACATCGTGATTCCAAGAAAAAATATGAAAATTTGAAGTTAAAAATTGGTGAATTAGAAAATCAACTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGTTAGGTTGTCTCAGGCTGTTGAGACTCTAAAACGCCTGTTTCAAGGAGTTCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTCGTAGTTGATAATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGGAATCAGTTCGGGTGAAGCCAATAATGGAAAGATTGCGCACATTACGGGGTACAGCAAAACTGATTTTTGACTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTAGTTTGTGATGATCTTGAGGAGGCCAAAATTTTAAGCTGGAGCGGTGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTCTGTTGACAAAATCTGGCACAATGACTGGGGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAATAAAAAGAAAGAGCAGTATGAATCAGAATTGGAAGAGCTAGGATCAATAAGAGATATGCACCTTAAAGAGTCTGAAGCATCTGGAAAAATTAGTGGGCTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGCGAAGCATTGAAGATAAACTTTCAAATTTGAGCCAAGAAAAAAAGACCATCAAAGAAAGAATTGAATGCATCAGTCCAGACCTGCAGAAGTTAAATGATGCTGTTAACAAGAGCAATGCAGATGTACGTAAGCTTGAGAAGAGGATAAATGAAATTACTGACAGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTTGCAAACATCCGTGAGTATGAAGAAAATCGACTCAAGGCTGCTCAAAGTATAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTCTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGATATGAATTCACGAATTCAAGAATTGGAAGCTTCTCTTGGTGCTTTAGAGAAAGATTTAAAACGTGTACATGACAGAGAGGCTGCAGCGAAGTTAGCAGCTGAGAATGCTACGGAAGAGATTAATCAACTTAAGGAAGAAGCTAAAGAGTGGAAATCAAAGTCAGAAGATTGTGAAAAGGAAATCCAAGAGTGGAAGAAGAAAGCTTCTGCTGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAGGAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAAATATTAGAAAAGTGTGAACTAGAACAGATTAGCCTCCCGATCATACTGGATCCTATGGATACTGATAGCTCAGTACCAGGTCCATCTTTTGACTTTGATCAACTAAATAGGGCACTGAAAGATAGGAGACACTCAGACAGGGATAAAATTGAGGTAGAGTTTAAGCAAAAAATTGATGCCTTGATATCTGAGATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAAGCTCTGCTAGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGGTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCACTGGGTGGAACAGCATACCTAAACTTGGAAAATGACGATGATCCATTTCTACATGGCATCAAATACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACAGTTGCTGCACTTGCATTGCTATTCTCCATCCATAGTTATAAGCCTTCCCCATTTTTTATATTGGACGAAGTTGATGCTGCGTTGGACAACTTGAATGTTGCCAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCAAGAATTAGTCAGGATGCTGATGGTGGAAATGGTTTCCAGAGTATTGTGATATCATTGAAAGACACCTTTTATGACAAAGCCGAAGCATTAGTTGGGGTTTACAGAGACTCTGAAAGAGGCTGTTCGAGAACTCTCACCTTTGATTTGACTAAATACCGAGAGTTCTAA 3651 0.4207 MPSLLSPGKIHCLEVENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYHLANSTEIKFTRTITSAGASEYRIDESLVNWETYNSRLKSLGILVKARNFLVFQGDVESIASKNPKELTALVEQISGSDECKRDYEQFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQQELKSMKGEHFLWKLFNIHNDYAETIKDLEDEEKSREGVVKELEYFESEASKKKKEQAKYLKEIALREKRIAEKGNKLDKSQPELLKLKEEMTRITSKIKKGKKELDKKKVERKKHDADIALLQNDIQDLTAKMADLQEKGRDVDDELDLQGNDLEEYFRIKEEAGMKTAKLREEKELLDRKLNADSEAQKNLEENLQQLRNRESELNSQEEQMRARLEKILDNSAKNKVGLENLKKELRVMQDKHRDSKKKYENLKLKIGELENQLRELKADRYENERDVRLSQAVETLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVDNEKTGKECIKYLKDQRLPPQTFIPLESVRVKPIMERLRTLRGTAKLIFDCKFDPSLEKAILFAVGNTLVCDDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLEKKIQYAEIEKRSIEDKLSNLSQEKKTIKERIECISPDLQKLNDAVNKSNADVRKLEKRINEITDRIYRDFSKSVGVANIREYEENRLKAAQSIAEERLNLSSQLSKLKYQLEYEQNRDMNSRIQELEASLGALEKDLKRVHDREAAAKLAAENATEEINQLKEEAKEWKSKSEDCEKEIQEWKKKASAATTNISKLNRLIHSKEAQIDQLNVQKQEILEKCELEQISLPIILDPMDTDSSVPGPSFDFDQLNRALKDRRHSDRDKIEVEFKQKIDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEREKTQRFNEVKQRRYHLFMDAFTHISGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARISQDADGGNGFQSIVISLKDTFYDKAEALVGVYRDSERGCSRTLTFDLTKYREF 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00349 1216 Coils Coil 1006 1026 - -
Gma10g00349 1216 Coils Coil 307 369 - -
Gma10g00349 1216 Coils Coil 170 190 - -
Gma10g00349 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1215 - -
Gma10g00349 1216 Pfam RecF/RecN/SMC N terminal domain 10 1197 IPR003395 -
Gma10g00349 1216 PIRSF SMC 8 1212 IPR024704 GO:0005524|GO:0016887
Gma10g00349 1216 Coils Coil 828 932 - -
Gma10g00349 1216 Coils Coil 791 811 - -
Gma10g00349 1216 Coils Coil 750 777 - -
Gma10g00349 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 265 IPR027417 -
Gma10g00349 1216 Gene3D - 578 659 - -
Gma10g00349 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 908 1199 IPR027417 -
Gma10g00349 1216 CDD ABC_SMC1_euk 1095 1210 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Gma10g00349 1216 Coils Coil 674 694 - -
Gma10g00349 1216 Coils Coil 198 228 - -
Gma10g00349 1216 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Gma10g00349 1216 Gene3D - 497 577 - -
Gma10g00349 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1215 - -
Gma10g00349 1216 SUPERFAMILY Smc hinge domain 481 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma10g00349 1216 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma10g00349 1216 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Gma10g00349 1216 Coils Coil 454 502 - -
Gma10g00349 1216 Coils Coil 398 446 - -
Gma10g00349 1216 Gene3D - 906 1215 IPR027417 -
Gma10g00349 1216 Gene3D - 8 231 IPR027417 -
Gma10g00349 1216 Coils Coil 708 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00349 Gma-Chr10 3298855 3311438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00349 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 2.65e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00349 K06636 - gmx:100791953 2249.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00349 10 3298855 3311438 Gma10g00349 10 3298855 3311438 ECH
Gma10g00349 10 3298855 3311438 Gma13g01036 13 24517045 24528513 GST