Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00345 atggggagagctccttgctgcgagaaaatgggattgaagaaaggattatggactcaagaagaagatctgattctcatccatcatatcagcacacatggccacaaaaattggcgtgccctacccaaacaagctgGGCTGTTGAGGTGTGGAAAGAGTTGCAGACTCCGGTGGATAAATTATTTGAAGCCAGATATTAAACGGGGCAACTTTACCAGAGAAGAAGAGGACATGGTAATCCAGTTGCATGAAACGTTGGGGAACAGATGGTCAGCCATAGCAGCAAAATTTCCGGGGCGCACAGACAACGAAATAAAGAATGTGTGGCACACCCACTTGAAGAAGAGGCTGCCCCAACAAGCAAAACAAAAGCAACAGCAAAAGCTATCTTCCTTGGACACCCTAAATTCCAAACAACAACCCGTGAATCTTCCCACAGAGGAGAAGAAGCCACTATCTCCCCCACAGTGTGTAAGTAGTAGCATGTCAACCCTCACCACTAGTAGTGACACCACCACCAACGAGCATAATAGTAATCATCATCACGTGCCCATGATGAATAACAGTACTACTGCTCCTGAATCGCTGGACGATGATTTGTGGTCTCAAGTTCTCTCGGCTGATAATAATAATTCCGATGCCACCACCAGTTTTCCGGCCACTGGCGCCGCGGCTGACGGGAAGTTCCAAGGGGTCCATCCATCAAGTGTGTACAATAATGTGGACTATTGGTTTGATGTTTACATGGGAGCGCAGGAATTTCCAAAATTTTGA 771 0.3865 MGRAPCCEKMGLKKGLWTQEEDLILIHHISTHGHKNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTREEEDMVIQLHETLGNRWSAIAAKFPGRTDNEIKNVWHTHLKKRLPQQAKQKQQQKLSSLDTLNSKQQPVNLPTEEKKPLSPPQCVSSSMSTLTTSSDTTTNEHNSNHHHVPMMNNSTTAPESLDDDLWSQVLSADNNNSDATTSFPATGAAADGKFQGVHPSSVYNNVDYWFDVYMGAQEFPKF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00345 256 Gene3D - 68 141 - -
Gma10g00345 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 251 - -
Gma10g00345 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma10g00345 256 CDD SANT 69 112 IPR001005 -
Gma10g00345 256 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gma10g00345 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma10g00345 256 MobiDBLite consensus disorder prediction 114 193 - -
Gma10g00345 256 MobiDBLite consensus disorder prediction 121 145 - -
Gma10g00345 256 SMART sant 13 63 IPR001005 -
Gma10g00345 256 SMART sant 66 114 IPR001005 -
Gma10g00345 256 MobiDBLite consensus disorder prediction 152 193 - -
Gma10g00345 256 CDD SANT 17 61 IPR001005 -
Gma10g00345 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma10g00345 256 Gene3D - 13 66 - -
Gma10g00345 256 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma10g00345 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma10g00345 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma10g00345 256 PANTHER TRANSCRIPTION FACTOR MYB15 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00345 Gma-Chr10 3274349 3277400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00345 1 256 MYB Transcription Factor Family AT2G31180 48.837 1.16e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g00345 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00345 K09422 - gmx:106794951 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00345 10 3274349 3277400 Gma10g00345 10 3274349 3277400 ECH
Gma10g00345 10 3274349 3277400 Gma19g01555 19 44934829 44937065 PCT
Gma10g00345 10 3274349 3277400 Gma03g01500 03 41249472 41251551 PCT