Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00343 ATGGATTTTGATTCATCTTTCTTCCAATACCAAAACTTTAACTCTTCCTTCGTAAATTCCTCTGTTTGTGCAGAACCATTCCCTTGGGAAGACTTTCTTTTCTTCAATGAAGAAAACACCACCACCACCACCACCACCGCCCTTGATTCCTTCACCATCACTGACCACTCCTCACAATCACAAATCAAGGAATCATCATCCTCAGATTATTCCAACTCTTCAGGCTCCTTGGTCAGCAGCACTGAGTCATCACAACTAGAAGTTTCATCCAATTTAACTCATGCAAGCCATCAACTCAAAGAAACACATGCTTCACCACAACCACAACCACCAAAGGAAACTAACAATGACAAGAGACCCTTTAGAGGAGTGAGGAGAAGGCCATGGGGGAAATTTGCTGCTGAAATAAGAGACTCAACGAGAAATGGTGTTAGAGTTTGGATTGGCACATTTGACACTGCTGAAGCAGCAGCACTGGCTTATGATCAAGCTGCTTTGTCCACAAGAGGGTCCATGGCAGTGCTAAATTTCCCAGAAGAAGTGGTGAGGGAATCACTCAAAGACATGCAGAGTAATAATAAGCCAATATCATTGGAAGATGGTTCCTCTCCAGTGTTGGCACTCAAGAGAAAACACACCATGAGAAGAAAATCCAAGGCTACCAACAAAAAAAACAAAAGGGACCATGGAATGGAATCACAAAATGTGAATATTATTTCACAAAATGTGCTGGTGTTGGAGGATTTGGGTTCTGAGTACTTGGAGCAACTTCTCAGCTTGACTTCTTCTTCTGATGATGATTATTTCCTATGCTAG 816 0.4216 MDFDSSFFQYQNFNSSFVNSSVCAEPFPWEDFLFFNEENTTTTTTTALDSFTITDHSSQSQIKESSSSDYSNSSGSLVSSTESSQLEVSSNLTHASHQLKETHASPQPQPPKETNNDKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMQSNNKPISLEDGSSPVLALKRKHTMRRKSKATNKKNKRDHGMESQNVNIISQNVLVLEDLGSEYLEQLLSLTSSSDDDYFLC 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00343 271 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Gma10g00343 271 PANTHER DNA-BINDING DOMAIN 4 262 IPR044808 GO:0003700|GO:0009873
Gma10g00343 271 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
Gma10g00343 271 MobiDBLite consensus disorder prediction 211 233 - -
Gma10g00343 271 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Gma10g00343 271 MobiDBLite consensus disorder prediction 57 76 - -
Gma10g00343 271 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Gma10g00343 271 Gene3D AP2/ERF domain 120 180 IPR036955 GO:0003700|GO:0006355
Gma10g00343 271 MobiDBLite consensus disorder prediction 81 126 - -
Gma10g00343 271 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Gma10g00343 271 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Gma10g00343 271 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 262 - -
Gma10g00343 271 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Gma10g00343 271 MobiDBLite consensus disorder prediction 81 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00343 Gma-Chr10 3245677 3246823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00343 91 259 AP2-EREBP Transcription Factor Family AT3G23240 54.386 3.57e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma10g00343 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00343 K14516 - gmx:100780775 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00343 10 3245677 3246823 Gma19g02349 19 52092396 52093024 ECH
Gma10g00343 10 3245677 3246823 Gma10g00343 10 3245677 3246823 ECH
Gma10g00343 10 3245677 3246823 Gma13g01030 13 24466262 24467298 GST
Gma19g01550 19 44885044 44886127 Gma10g00343 10 3245677 3246823 PCT
Gma03g01496 03 41202352 41203352 Gma10g00343 10 3245677 3246823 PCT
Gma10g00343 10 3245677 3246823 Gma19g01550 19 44885044 44886127 PCT
Gma10g00343 10 3245677 3246823 Gma03g01496 03 41202352 41203352 PCT