Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00342 ATGGAGGGTGGAAGATCATCAGTTTCAAATGGGAATGTTGAGGTTCGTTATAGAGGGATTAGAAGAAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACAAGGAAAGGAACAAGGATATGGCTTGGAACATTTGACACTGCTGAACAAGCTGCACGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGCCACAGAGCAATTCTCAACTTCCCAAATGAGTATCAATCTCATAATCCAAACTCTTCTTTGCCTATGCCTCTAGCTGTGTCAGCTCCTCCTTCTTATTCTTCTTCTTCTTCCACTTCTAATTATTCCGGTGATGATAATAATAACCACCTTGTGAGACCAGCTTTTTCTGGAGAAATAATGCAAGGTGGTGATCATGATGATGATACTTTTGAGTTGGAGTACTTCGATAATAAGTTGCTCGAGGAACTCCTTCAGATGCAAGATAACAGACACTTCTAA 477 0.4172 MEGGRSSVSNGNVEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQSHNPNSSLPMPLAVSAPPSYSSSSSTSNYSGDDNNNHLVRPAFSGEIMQGGDHDDDTFELEYFDNKLLEELLQMQDNRHF 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00342 158 PANTHER DNA-BINDING DOMAIN 16 149 IPR044808 GO:0003700|GO:0009873
Gma10g00342 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 149 - -
Gma10g00342 158 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Gma10g00342 158 MobiDBLite consensus disorder prediction 82 115 - -
Gma10g00342 158 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Gma10g00342 158 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gma10g00342 158 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Gma10g00342 158 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Gma10g00342 158 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Gma10g00342 158 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Gma10g00342 158 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00342 Gma-Chr10 3235842 3236318 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00342 14 157 AP2-EREBP Transcription Factor Family AT3G23230 50.000 1.03e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma10g00342 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00342 - - gmx:100779173 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00342 10 3235842 3236318 Gma10g00342 10 3235842 3236318 ECH
Gma10g00342 10 3235842 3236318 Gma13g01029 13 24453129 24453703 GST
Gma19g01549 19 44873051 44873685 Gma10g00342 10 3235842 3236318 PCT
Gma03g01495 03 41190069 41190846 Gma10g00342 10 3235842 3236318 PCT
Gma10g00342 10 3235842 3236318 Gma19g01549 19 44873051 44873685 PCT
Gma10g00342 10 3235842 3236318 Gma03g01495 03 41190069 41190846 PCT