Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00338 ATGGCACTGAGAAAGAACCACTCCTACAACAACAAGCTTGGTTATGAAGCTTTCCCACCCATCAAAACCCAGGCTGGAACACTCCAACACCCACCACAACCTGCTTCCTCAGACTATGCTTTTCCCATATTAGTCATTGTTGTTCTCAGCATCTTGGCCACTGTCTTGTTACTCCTCAGCTACTTCACTTTTCTAACCAAATACTGCTCAAACTGGCGTCAAGTTAACCCAATGAGATGGATTTCCATCCTTCGAGCTCGGCACGACGAGGACCCCTTCATAGCATTCTCTCCTACCATGTGGAACCGAGGGCTTGATGACTCTATCATCAGAGAAATCCCAACTTTTAAGTTCATAAAAGAAGAAGGTGAGGATCAAAGTGTGTATTATGGTTGTGTGGTTTGTTTGACTGAGTTCAAGGAACATGATGTGCTGAAAGTTCTTCCCAATTGCAACCATGCTTTCCATTTGGACTGCATTGACATTTGGCTTCAGACCAATTCCAATTGTCCACTTTGCAGATCAGGCATTTCAGGAACCACCCACTGTCCATTGGACCACATCATAGCACCAAGTTCTTCTCCTCAGGATTCTCAGTTACTCTCCAACATGGGAAGTGATGAAGATTTTGTGGTTATTGAACTTGGAGGAGAACATGGAGCAGCACTTCCACAGGTGCAACAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATAGAAACCACTCTACAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGCATTGATATCAGAAAGAAAGATGATCAGTTCCATATTCAGCCTATTAGAAGATCTTTCTCAATGGACTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATTATACAACAAAGTAGGCTTCAGAATGAGGCTAGTGCTAGTGAGGATTGTAATAGCAGATGTCGAAGACCATTCTTCCCGTTTTGCTATGGAAAGGGATCCAAAAATGCAGTTCTTCCTTTGGAGAATGATGTTTAA 1017 0.4346 MALRKNHSYNNKLGYEAFPPIKTQAGTLQHPPQPASSDYAFPILVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWISILRARHDEDPFIAFSPTMWNRGLDDSIIREIPTFKFIKEEGEDQSVYYGCVVCLTEFKEHDVLKVLPNCNHAFHLDCIDIWLQTNSNCPLCRSGISGTTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEHGAALPQVQQQERNDSRGSLAHRNHSTRKCHHVSIMGDECIDIRKKDDQFHIQPIRRSFSMDSAHDRQTYLDAQVIIQQSRLQNEASASEDCNSRCRRPFFPFCYGKGSKNAVLPLENDV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00338 338 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 335 - -
Gma10g00338 338 SUPERFAMILY RING/U-box 111 178 - -
Gma10g00338 338 CDD RING-H2_PA-TM-RING 132 174 - -
Gma10g00338 338 PANTHER RING-H2 FINGER PROTEIN ATL16 5 335 IPR044600 GO:0016567|GO:0016740
Gma10g00338 338 Pfam Ring finger domain 132 174 IPR001841 -
Gma10g00338 338 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Gma10g00338 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 179 IPR013083 -
Gma10g00338 338 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00338 Gma-Chr10 3181834 3182850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00338 32 301 C3H Transcription Factor Family AT1G04360 44.625 1.46e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00338 K19041 - gmx:100809883 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00338 10 3181834 3182850 Gma10g00338 10 3181834 3182850 ECH
Gma10g00338 10 3181834 3182850 Gma13g01023 13 24351793 24352806 GST
Gma10g00338 10 3181834 3182850 Gma19g01546 19 44830986 44832136 PCT
Gma10g00338 10 3181834 3182850 Gma03g01492 03 41163981 41165015 PCT