Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00335 ATGAACAAATCCTCAGATGCAACTGCGTCTCCTACGAGCAGAGGCAGATACAAAAAACCCAATTTCCGAAGCTCCAAGTCCCAACCCCCAAGCCCCGTCCAGTTCAGCTCCAAGACGCCGGAGAAGCCGCCGCATCGAATCCGCAACCGTGGCGTCGCGCTCTCCGTCGCTGACATCAGAAAGGCCGCCTGCAAGCGCTTGCAGGATCAGAAGCAATGCACTGAAATGACGTCGGCGCCATCGTCATCGACGCTGAACAAGAGTGTCAGGAGACAAATCTCACTGTGGCCTTCTTCTCCCAGCAAACCAAAGACTACTGATGATGAATCCAACAAGCTTCCCGAGAAATATGAAATTTTGGATGAGTTCTTCGATCGCTTGGATACTTTGGTTTCATTGCACCGTCTGAAACGGTGGACTCCAACCTTTACTTCAATCAGTTCAAGGATTGAATCTTTAACTGACAGGAGGTTTACTCACAGTCATCTAGCCCAGTTGAAATTTATCTTGCCTAATGCTATTGTTCTTAAGAAGCATCTTGTGCTTGATGAACGGACGAGTTGTATGAAGCCGGATATTCACATTTCTTTAGACCCTGATGCGGTAGAGGCCGACGATGCCAAGTTGCCCCCACAACGTGGGAGAGTGTCGCTGAAGAAGGTGTTTCGGGCACGGCTAAGAGATTTTTGTGAATCTCATCCTGAGGGTGATGAAATTCCAGAAGGGACATTGCCTGAGCCATTCAATCGCCCAAAGAAAGACAGTGTTTTGGACATGTTGGAAACTCGCCTCCCAACAAAATTGCCACCCTGCATGCGTTATAGTGACATTGTCAATAATGCAGAGTCTGCTAAATTGGATGAGAAATTGTCTGTACTTGTCAATACATCAATTGAATTGCCTAATGAGCATCTGGCAGCACCTTCTCACATGTCTCCATCCTTTAGAGCAGGTGATGTACAGAAAAATCCTCTGTTAGATTTATTACAGCCCCTGGCTTTTCCAGTTTCAGAGTCAAGCCGGAATGAAAATACACCCTTTGTGGATACTGAATCTCATCTGAAAACGTCCCCAGCTAAGTTGGCTTTAGAAGCATCTAGTAGTGAAAGTTGTCTAACAATTTGTGCTCCTCTGGAATCATCATGTGCTCACCCTGCTACTCCAAGCAAAACCACTGAGTACACCGAAAACAAAGATGGGTCTCTCAAGAGCATTGATGCCATGTCAACTCCAGCTAAACTTGTTTCTACTCCAATTAGGTTGATGAGTGCCACACCTGCCTTGCGGTCACCCAAAAGGCATTATATGAGCCCAGATGACCACTCTATCAGTTCTTTGAACAAGTTAGCTCGGCGTCCACCTCGCTCAAGGTCATTGAAATTTGACACTCCAGTGAAGAACAAGGATGATATTTTTGACACCCTCCAAGAAAGTACTATCCAATCGATTAGAGAAAAGGAAAGGCTGGCCATGGAGAAAAGAGACCCAGCTATCACAGAAGCAAAGAAACGAAAGAAAAATATAGCTAGCCTCCCCAAGCTCTTTGACATGATACGTGGGTTACTTCGACAGCGGAATTGTATCACTAAAGCAGAGCTTGTAAGCAAGATAATCTCAAGCCGATGTGATATTGCTGACAGAAGTGAAGTTGAAGAGCAGCTAAATTTGTTGCAAGAACTAGCACCAGAATGGATTTCTGAGAAGCAGGTCTCTAGTGGGGATTTGCTATTATTCATAAATAAAATGTTGAGCCCTGAAACCGTTCGAGCATCCCTTGAAGAAGCAACATAG 1791 0.4545 MNKSSDATASPTSRGRYKKPNFRSSKSQPPSPVQFSSKTPEKPPHRIRNRGVALSVADIRKAACKRLQDQKQCTEMTSAPSSSTLNKSVRRQISLWPSSPSKPKTTDDESNKLPEKYEILDEFFDRLDTLVSLHRLKRWTPTFTSISSRIESLTDRRFTHSHLAQLKFILPNAIVLKKHLVLDERTSCMKPDIHISLDPDAVEADDAKLPPQRGRVSLKKVFRARLRDFCESHPEGDEIPEGTLPEPFNRPKKDSVLDMLETRLPTKLPPCMRYSDIVNNAESAKLDEKLSVLVNTSIELPNEHLAAPSHMSPSFRAGDVQKNPLLDLLQPLAFPVSESSRNENTPFVDTESHLKTSPAKLALEASSSESCLTICAPLESSCAHPATPSKTTEYTENKDGSLKSIDAMSTPAKLVSTPIRLMSATPALRSPKRHYMSPDDHSISSLNKLARRPPRSRSLKFDTPVKNKDDIFDTLQESTIQSIREKERLAMEKRDPAITEAKKRKKNIASLPKLFDMIRGLLRQRNCITKAELVSKIISSRCDIADRSEVEEQLNLLQELAPEWISEKQVSSGDLLLFINKMLSPETVRASLEEAT 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00335 596 MobiDBLite consensus disorder prediction 1 35 - -
Gma10g00335 596 MobiDBLite consensus disorder prediction 430 463 - -
Gma10g00335 596 MobiDBLite consensus disorder prediction 72 111 - -
Gma10g00335 596 PANTHER DNA REPLICATION FACTOR CDT1 14 596 IPR045173 GO:0003677|GO:0030174|GO:0071163
Gma10g00335 596 MobiDBLite consensus disorder prediction 72 104 - -
Gma10g00335 596 SMART CDT1_2 113 246 IPR014939 -
Gma10g00335 596 MobiDBLite consensus disorder prediction 1 51 - -
Gma10g00335 596 CDD Cdt1_c 478 593 IPR032054 -
Gma10g00335 596 Gene3D - 467 596 IPR038090 -
Gma10g00335 596 SUPERFAMILY "Winged helix" DNA-binding domain 110 248 IPR036390 -
Gma10g00335 596 Pfam DNA replication factor CDT1 like 113 206 IPR014939 -
Gma10g00335 596 CDD Cdt1_m 112 267 IPR014939 -
Gma10g00335 596 Pfam DNA replication factor Cdt1 C-terminal domain 479 570 IPR032054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00335 Gma-Chr10 3159927 3163151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00335 409 594 Core DNA Replication Machinery Family AT2G31270 46.411 2.19e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00335 K10727 - gmx:100778818 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00335 10 3159927 3163151 Gma10g00335 10 3159927 3163151 ECH
Gma10g00335 10 3159927 3163151 Gma13g01020 13 24329789 24332941 GST