Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00329 ATGACTGGTACAGGATCTCCTTGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTGAGAGGCTGTGTTTTTGCACCTTACTTTTGCCAAGAGCAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTCGCTCACCTTCCTGTGAGTGATCGTTGTGAAGCTGCTGTCACAATCTCCTATGAAGCTCAAGCCAGACTTCAGGATCCAATTTATGGATGTGTCTCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGCTTACCTTAAGGAACAAGCAGCTCAGAGTTGTCTCAATGGCACTATCAATGAAAACCCTAATGAAAAATTATTGGAAAAATCTTCTGCTGCTTTACCCCAAGACCTTCAAAGTTGGTTTCAGGTGGAAAATTCCAACCTGGGGCCAGAATTTCTTCCTAACATGTGTACTAATTTATCAACACAACATTATGGGAACAATGCTCTCATGATGGAAGATCTAAACCCTATTGGGGTTAATAATGAAAATTCAGGAGCCATGGAAGAAAGCAGCTCCTTCTCCAGCTTTGATGAGAGTTCTAATAATAGCTACTCCATGTCCTATGACATGCAAACAAACAGGAGGACGTGGGGTTTTCATGAAGTGGAGGATCTACATTCAGTGGCTTTTGGATACGGAACTCGATCACATTCATGA 720 0.4264 MTGTGSPCGACKFLRRKCVRGCVFAPYFCQEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQSCLNGTINENPNEKLLEKSSAALPQDLQSWFQVENSNLGPEFLPNMCTNLSTQHYGNNALMMEDLNPIGVNNENSGAMEESSSFSSFDESSNNSYSMSYDMQTNRRTWGFHEVEDLHSVAFGYGTRSHS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00329 239 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Gma10g00329 239 Coils Coil 87 107 - -
Gma10g00329 239 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Gma10g00329 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 236 - -
Gma10g00329 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00329 Gma-Chr10 3097732 3098857 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00329 7 233 AS2 family AT3G58190 51.528 1.66e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma10g00329 LOB 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00329 K13945 - gmx:100776678 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00329 10 3097732 3098857 Gma13g01013 13 24256108 24257454 GST
Gma19g01540 19 44759704 44760789 Gma10g00329 10 3097732 3098857 PCT
Gma03g01487 03 41107244 41107999 Gma10g00329 10 3097732 3098857 PCT
Gma10g00329 10 3097732 3098857 Gma19g01540 19 44759704 44760789 PCT
Gma10g00329 10 3097732 3098857 Gma03g01487 03 41107244 41107999 PCT