Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00325 ATGGAATTCAGCTACCAAGAAGATTCCTCCAAAAGCTCGAGCAACGAAATCGATCGATCGTCCGAACAGAATGATGAGACGGGCACCGGAAGATCCTTCGAGTGTGTGTTTTGCAAGAGAGGCTTCAACACTGCACAGGCTTTGGGGGGACACATGAACATACACAGAAAAGCTAGAGCCAATAACAGCAAGGCCAAGCCCAATTTTCCTCCCTCGAGTTCAAGCAAGGTTGATCATCATGAGAGTAATAACTATGCAAATCCAAGCTATCTTACAAGAGGGAATCACTATTCTTCTACTCTTCCTGATCATAGAGAGAGAACCAAAGGGATCCTCATCTTCTGTTTGGACAAGATTGGAGGCAAAGGGGTTTGA 375 0.4533 MEFSYQEDSSKSSSNEIDRSSEQNDETGTGRSFECVFCKRGFNTAQALGGHMNIHRKARANNSKAKPNFPPSSSSKVDHHESNNYANPSYLTRGNHYSSTLPDHRERTKGILIFCLDKIGGKGV 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00325 124 Pfam C2H2-type zinc finger 33 57 - -
Gma10g00325 124 MobiDBLite consensus disorder prediction 56 103 - -
Gma10g00325 124 PANTHER OS07G0101800 PROTEIN 1 91 - -
Gma10g00325 124 SUPERFAMILY beta-beta-alpha zinc fingers 31 59 IPR036236 -
Gma10g00325 124 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 1 91 - -
Gma10g00325 124 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Gma10g00325 124 MobiDBLite consensus disorder prediction 65 98 - -
Gma10g00325 124 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Gma10g00325 124 Gene3D Classic Zinc Finger 6 88 - -
Gma10g00325 124 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00325 Gma-Chr10 3061191 3061674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00325 33 74 C2H2 Transcription Factor Family AT5G43540 57.143 1.19e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g00325 zf-C2H2_6 5.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00325 - - gmx:102661128 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00325 10 3061191 3061674 Gma13g01009 13 24220657 24221238 GST
Gma19g01537 19 44722502 44723026 Gma10g00325 10 3061191 3061674 PCT
Gma03g01481 03 41052299 41052835 Gma10g00325 10 3061191 3061674 PCT
Gma10g00325 10 3061191 3061674 Gma19g01537 19 44722502 44723026 PCT
Gma10g00325 10 3061191 3061674 Gma03g01481 03 41052299 41052835 PCT