Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00324 ATGGAAGGAAACTATCTGAACAGAAACAGCACTACTCCACAGAGAGAGGATCATAGCTTTGGTTTTGAGGAGCATCCATGGGGAACTTCATGGCCTGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATCGGGCAAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAACCTAACCCTAACACTAAGCCTAATAATAATAACCCAACTCTTCTTCCACCACCCCCTTCTTCTTCACCATATCCTTTATTATCTGATGAGCCTTTGAACTATGCACATCCTTCTCCACTTTGTAGTCCTTGTCTCACTTTGTCTTCTTCACCCTCCCCAGCTTCTACCAGTGGAGACAAGAAACCAAGACTCACCCCTTCTCATCATCAATTTCCTCTTTTGAGTCCTCAAAGCAGCCAAATTAAGATGATGAGTGAGAACACAAGGAGTGATTTCAGTGCTGATGAGGAAATGAAGGGCTATGTGGAGGAGGAGGAGCACAAGGGTTTCCAGAAGAATGAGCAAAACATTACATTGGAATTAGGAATAGGGTTGCTTAAACACCAAGAGGAGAAGTTGGATTTGGAGCTTCGACTCGGGCATTAA 660 0.4379 MEGNYLNRNSTTPQREDHSFGFEEHPWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPNTKPNNNNPTLLPPPPSSSPYPLLSDEPLNYAHPSPLCSPCLTLSSSPSPASTSGDKKPRLTPSHHQFPLLSPQSSQIKMMSENTRSDFSADEEMKGYVEEEEHKGFQKNEQNITLELGIGLLKHQEEKLDLELRLGH 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00324 219 MobiDBLite consensus disorder prediction 167 187 - -
Gma10g00324 219 MobiDBLite consensus disorder prediction 70 107 - -
Gma10g00324 219 SMART c2h2final6 36 58 IPR013087 -
Gma10g00324 219 Pfam C2H2-type zinc finger 36 60 - -
Gma10g00324 219 MobiDBLite consensus disorder prediction 70 87 - -
Gma10g00324 219 MobiDBLite consensus disorder prediction 124 187 - -
Gma10g00324 219 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 8 219 - -
Gma10g00324 219 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Gma10g00324 219 MobiDBLite consensus disorder prediction 1 16 - -
Gma10g00324 219 PANTHER OS07G0101800 PROTEIN 8 219 - -
Gma10g00324 219 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Gma10g00324 219 Gene3D Classic Zinc Finger 21 85 - -
Gma10g00324 219 MobiDBLite consensus disorder prediction 1 24 - -
Gma10g00324 219 MobiDBLite consensus disorder prediction 88 103 - -
Gma10g00324 219 MobiDBLite consensus disorder prediction 124 139 - -
Gma10g00324 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Gma10g00324 219 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00324 Gma-Chr10 3051217 3051876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00324 1 218 C2H2 Transcription Factor Family AT3G23130 37.054 2.90e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma10g00324 zf-C2H2_6 6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00324 - - gmx:102660985 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00324 10 3051217 3051876 Gma13g01008 13 24212035 24212670 GST
Gma19g01536 19 44711098 44713069 Gma10g00324 10 3051217 3051876 PCT
Gma03g01480 03 41033470 41034586 Gma10g00324 10 3051217 3051876 PCT
Gma10g00324 10 3051217 3051876 Gma19g01536 19 44711098 44713069 PCT
Gma10g00324 10 3051217 3051876 Gma03g01480 03 41033470 41034586 PCT