Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00310 atgaagatgaagaggttggtgaaagtgaagaggGATGCGATTGCAGCATGCATGACTTGCCCGCTCTGCAATAAGTTCCTCAAAGAAGCCACTGCTATTTCTCTTTGCCTTCATACGTTTTGCAGGAAGTGCATTTACGACAAAATTGCAGATGAAGAATTGGAAAATTGTCCAGTATGCAACATTGATTTGGGCATTGTTCCGCTCGAGAAAATGAGGCCAGATAACATTTTGCAAGATTTAAGGAACAAAATTTTCCCTTTCAAAAAAAGAAAGGAGAAGGCACCTGTATCTGTCTCCTCAGCACTATTACCAGCTAGAAGAAAGGAGAGATCACTTTCATCTTTGGTTGTCAGCACTCCAAGGGTATGTACACAGTCAACCATGACAGGAAGAAGAACAAAACCTGCAAGAAAGGCTAGTGGCCTGCAGGGATCTAGTTTCTCCATTGAGAAGCTCATTAAAAAAGAAGAGGAATTACTGGAAGATCACCAAGATAATTCATGCTCGCCTGACACTTCAAACAAGTCTGCTAAGAATGGTGGGCAGAGTTTGTCACCTTGTAAAAATAGCCAATCCATATGCAATAGAGAACCACAGAATGGTGCTGAACCACACGAAGCAAAATGGGATCTTTGGAAAACTTTGAATTATTTAGCAGAGGCTGCAAGTAGGAGTAAGCCTTTTAAGTCTAATGTGCAAGCATCTGATGCTAAACTAGAATCCATGAAAGTGACTGACAGTGATGCTAAAGTGCTGAAAGCCAAAATTAAGGAAAAGAAGCGCAAGGCAAAAGTCGAAGATGAAAAGATTATCACTGATCATGTCTCTTCTGATACAGCAAAACCCAACAAATTGCGAAGAGTTCGCCCAAGAAAGGAACCTGTTTTTGGAGAATCTAGAATATCACCTCAGGCTGTTCTGGATGCTACTGACAGAAATCTCTTATGGAATGATTCAATTTGGTTCTCCTTAGCAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTACCGCAAATTCCTTCAAATTATGTAAGAATAAAGAATGGAAGCATACCTGTCTCGTTTATCCAAAAATTATTAATGAAGAAACTAGGCCTGAATAGTGAGGATGAGGTTGAGATTAAATGCATGGGACATCCAGTGCTTCCTTCACTGCAGGTGCAAAACTTGGTTGACTCGTGGCTTGATATGGCGGCTTCAGGACATAGAATTCCAGCAACCATTGGATCCTCGGGGAAAGATTTTGTCATGATCCTAACCTATGGTCGGAAGGTCCTACACCCTTGA 1290 0.4031 MKMKRLVKVKRDAIAACMTCPLCNKFLKEATAISLCLHTFCRKCIYDKIADEELENCPVCNIDLGIVPLEKMRPDNILQDLRNKIFPFKKRKEKAPVSVSSALLPARRKERSLSSLVVSTPRVCTQSTMTGRRTKPARKASGLQGSSFSIEKLIKKEEELLEDHQDNSCSPDTSNKSAKNGGQSLSPCKNSQSICNREPQNGAEPHEAKWDLWKTLNYLAEAASRSKPFKSNVQASDAKLESMKVTDSDAKVLKAKIKEKKRKAKVEDEKIITDHVSSDTAKPNKLRRVRPRKEPVFGESRISPQAVLDATDRNLLWNDSIWFSLAASENQEGDAPLPQIPSNYVRIKNGSIPVSFIQKLLMKKLGLNSEDEVEIKCMGHPVLPSLQVQNLVDSWLDMAASGHRIPATIGSSGKDFVMILTYGRKVLHP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00310 429 Coils Coil 250 270 - -
Gma10g00310 429 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Gma10g00310 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 IPR044807 GO:0004842
Gma10g00310 429 SUPERFAMILY RING/U-box 15 85 - -
Gma10g00310 429 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Gma10g00310 429 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 425 - -
Gma10g00310 429 MobiDBLite consensus disorder prediction 124 144 - -
Gma10g00310 429 MobiDBLite consensus disorder prediction 161 204 - -
Gma10g00310 429 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Gma10g00310 429 MobiDBLite consensus disorder prediction 167 199 - -
Gma10g00310 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 103 IPR013083 -
Gma10g00310 429 SMART ring_2 20 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00310 Gma-Chr10 2862018 2868521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00310 1 348 C3H Transcription Factor Family AT2G30580 48.997 9.23e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00310 K16277 - gmx:100778462 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00310 10 2862018 2868521 Gma02g01291 02 14998554 15005478 GST
Gma19g01528 19 44619527 44624921 Gma10g00310 10 2862018 2868521 PCT
Gma03g01468 03 40911465 40916731 Gma10g00310 10 2862018 2868521 PCT
Gma10g00310 10 2862018 2868521 Gma19g01528 19 44619527 44624921 PCT
Gma10g00310 10 2862018 2868521 Gma03g01468 03 40911465 40916731 PCT