Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00303 ATGGGAAAGTACGAAAAAGAGCTTAATCTCGAGGCTACAGAGTTGAGATTGGGGTTGCCTGGAAGCGATGAGCCTGGGAAACGTTCTATTGTTAGAAGCAATAAGAGATCTTCAACAGAAGCAAGCGAGGAAGAGTGCATAAGCAAGGGCAACATGAATTCTAATGGTTCTGATATCACAAGTGATGACCAAGACAACCTTGTGCCACCTGCAAAAGCACAAGTAGTGGGATGGCCACCGGTTCGATCATATAGGAAGAATACTCTACAACAAAAGAAAGAGGAACAGGGTGAAGGGTCTGGGATGTACGTGAAAGTTAGCATGGCAGGTGCACCTTACTTAAGGAAGATAGATCTAAATGTTTACAAGAGCTACCCAGAACTTCTCAAGGCCTTGGGAAATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGGGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTGTCATCCTGCAAGAGACTGAGAATTATGAAAGCATCAGAAGCAAAGGGGTTGGGTTGTTTTTGA 594 0.4343 MGKYEKELNLEATELRLGLPGSDEPGKRSIVRSNKRSSTEASEEECISKGNMNSNGSDITSDDQDNLVPPAKAQVVGWPPVRSYRKNTLQQKKEEQGEGSGMYVKVSMAGAPYLRKIDLNVYKSYPELLKALGNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMKASEAKGLGCF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00303 197 MobiDBLite consensus disorder prediction 28 43 - -
Gma10g00303 197 MobiDBLite consensus disorder prediction 15 66 - -
Gma10g00303 197 ProSiteProfiles PB1 domain profile. 101 188 IPR000270 GO:0005515
Gma10g00303 197 SUPERFAMILY CAD & PB1 domains 96 187 - -
Gma10g00303 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 195 IPR003311 GO:0005634|GO:0006355
Gma10g00303 197 Pfam AUX/IAA family 13 195 IPR033389 -
Gma10g00303 197 Gene3D - 95 197 - -
Gma10g00303 197 MobiDBLite consensus disorder prediction 44 64 - -
Gma10g00303 197 PANTHER AUXIN-INDUCED PROTEIN 3 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00303 Gma-Chr10 2805057 2806827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00303 92 194 B3 DNA Binding Superfamily AT2G46530 36.893 3.42e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gma10g00303 AUX_IAA 1.3e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00303 K14484 - gmx:100799875 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00303 10 2805057 2806827 Gma02g01300 02 15072998 15074642 GST
Gma19g01520 19 44553574 44554727 Gma10g00303 10 2805057 2806827 PCT
Gma03g01460 03 40832803 40834392 Gma10g00303 10 2805057 2806827 PCT
Gma10g00303 10 2805057 2806827 Gma19g01520 19 44553574 44554727 PCT
Gma10g00303 10 2805057 2806827 Gma03g01460 03 40832803 40834392 PCT