Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00286 ATGAATTATATGTATCAAGTGAAAGAAGAATACTTAGAATCATCACCATCATCATCATATCAATTAGGTGGTGAATTTCCAGCAAAGCCAATTGAAGGACTTCATGACACGGGACCCCCGCCATTCCTGACCAAAACTTTTGATGTTGTGGATGATCCTGTTACCAATCATGTAGTTTCTTGGAGCAGAGATGGCACAAGCTTTGTGGTTTGGGATCCAAATACCTTCTCTACAAGTCTTCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAACTAAACACTTATGGTTTTAGAAAAATTGATCCAGACAAATGGGAGTTTGCAAATGAAGGATTCATCAGAGGGCACAGGCACTTGTTAAGAAACATAAGGAGAAGGAAGGCACCTTCCCAACTAACACAAGGTCACCACTGTGTTGAGGTTGGACGTTTTGACTTAGACAAGGAGATTGATCGTTTGAGGCATGACAAGCTGGTGTTGCTGATGGAGCTTGTGAATCTAAGAAAGCAGCAACAGAAAGCCAGAATGTACATTCAGGAGATGGAGCAAAGGTTACAAGGGACAGAAATCAAGCAGAAACAGATGATGGCATTCTTAGCTAGAGCTATAAAAAATCCAACCTTCATACACCAACTCCTACAGAAAGAGAAGAGTAAGGAGCTTGAAGAAGCTTTCACCAAAAAGAGAAGGCAAATTGAGCAAGGAGCTAGAGGGTTTGGAGAATCAAGCAGTGTTAAAGTTGAGGCTTTAGAATTTGGAGAATCAGAGTTGGAAATGTTAGCTAGGGAAATGCAAGGTTTTGGAAAGGGAGGGATAGACCGGGAGGTAGGACCTGAGGCACTAGAATCACAAGAGAGGCTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTATTGTTTAGTGAGAAATTTGAGGGTCGATTAGATATTCCAACTGCTGAAGATAAAGATGAAGATGTTATCAAAGTGTTCAAGACTTCAAGACCTGCCAAAGTCAATTATAAAGGAGGCGCATACGCACATGGTGAAACCCCGGATTCTCACTTCTCTCACTTCAATAGTTTGATGAGGTAG 1092 0.4139 MNYMYQVKEEYLESSPSSSYQLGGEFPAKPIEGLHDTGPPPFLTKTFDVVDDPVTNHVVSWSRDGTSFVVWDPNTFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFIRGHRHLLRNIRRRKAPSQLTQGHHCVEVGRFDLDKEIDRLRHDKLVLLMELVNLRKQQQKARMYIQEMEQRLQGTEIKQKQMMAFLARAIKNPTFIHQLLQKEKSKELEEAFTKKRRQIEQGARGFGESSSVKVEALEFGESELEMLAREMQGFGKGGIDREVGPEALESQERLDRVLDEEFWEELLFSEKFEGRLDIPTAEDKDEDVIKVFKTSRPAKVNYKGGAYAHGETPDSHFSHFNSLMR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00286 363 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00286 363 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 321 IPR027725 -
Gma10g00286 363 Gene3D - 34 132 IPR036388 -
Gma10g00286 363 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00286 363 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00286 363 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00286 363 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-7A 27 321 - -
Gma10g00286 363 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Gma10g00286 363 Coils Coil 169 189 - -
Gma10g00286 363 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma10g00286 363 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00286 Gma-Chr10 2609355 2611010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00286 29 305 HSF AT3G22830 51.227 2.12e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma10g00286 HSF_DNA-bind 2.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00286 K09419 - gmx:100811945 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01505 19 44407655 44409939 Gma10g00286 10 2609355 2611010 PCT
Gma03g01449 03 40707401 40709749 Gma10g00286 10 2609355 2611010 PCT
Gma10g00286 10 2609355 2611010 Gma19g01505 19 44407655 44409939 PCT
Gma10g00286 10 2609355 2611010 Gma03g01449 03 40707401 40709749 PCT