Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00280 atggagcagtatgaaattcttgaacagattggaagaggttcctttgcttcagctctacttgtcaggcacaggcacgaaaacaaaaggtatgtccttaagaagatacgtcttgcccgccagactgatagaactcgtagatctgctcaccaggagATGGAGCTTATCTCTAAAGTTCGCAATCCATTTATCGTAGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGGCCGAGGCAATTAAAAAGGCCAATGGCGTTTATTTTCCTGAAGAGAGGCTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGCCTTGCTAAAATGTTGACATGCGATGATCTTGCATCCTCAGTTGTGGGGACTCCAAGTTATATGTGCCCTGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCGTTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGAGGGCTTGTTAAGAGTATGCTGCGGAAGAATCCTGAGCTTCGGCCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGAAGAAGTACTTATCCATTCCAATGGTCTGACTCAAACTATGTAAGGAGGACTCAGTTTCTCGAGCCAGGATCTGTTTCTACTCTTTCTGACAGAGACAAACGATTGTCATTCAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAGCTAGGTTCTGTGTGTTCTACTCAAAGAGCACTAGGATTCTCTACTTGTTCAAAAGAGAAGCACTATGAACTATCTGTTGGCCTTGTCCGTGAAGAATGCAATTTTAACAAATCAAGAGACACAAAGTCCTCAACTGTTGATAGATTGCCAAGATTGAGATCAGCTAAGGAATATGCCACTCCCCGACGGCAGACTATACCATCAAAGATATCCTATACTGGTTCCAAGCGTGAGTTACTTCCATCCACTCCAGCAGGGGGTAAATTCACCCCACCAACTAGAAGAGCTTCCCTTCCACTGCCTACCAGAACCATGTGCACAACCACCCCTTATAGAGCTAATGTTGGTCTTCTTCGAGGTGTGGACTCTCCTGATATTTCTGTCAATGCACCGCGAATTGACAAGATGGCTGAATTCCCTTTGGCCTCTTGTGAGGATTCTCTCTTCCCTGTCCGTGGAACTTCATCAACTTCCGCTCAGTGCTCTTCTGGTTCGCCAAAGAGTGCTGACTGCTTAATCACGAAGGACAAGTGTACAATCCAAGTTGTGGACAAGGCCAGTGTCCCTTCCAGTGGCAGTGATGCTTGTCCTGCTGCTCCAGTTTCACATGGCAATGAATGCTCTGAACATGCTGTTTCAAGCCACTCCTCTGCTGAGTCTAGCAGGCACAGGTTTGACACCTCGTCTTACCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTCGAGTTCTCTGCACGGCTCCTGCAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTTGGTCCCGAGAAGGTTTCCCCAAGAGAAACAGCTATCTGGTTGGCTAAGAGCTTCAAGGAAACTGTGGCCTAA 1833 0.4108 MEQYEILEQIGRGSFASALLVRHRHENKRYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANGVYFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTQFLEPGSVSTLSDRDKRLSFSNDRALNPSISGTELGSVCSTQRALGFSTCSKEKHYELSVGLVREECNFNKSRDTKSSTVDRLPRLRSAKEYATPRRQTIPSKISYTGSKRELLPSTPAGGKFTPPTRRASLPLPTRTMCTTTPYRANVGLLRGVDSPDISVNAPRIDKMAEFPLASCEDSLFPVRGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKASVPSSGSDACPAAPVSHGNECSEHAVSSHSSAESSRHRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00280 610 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00280 610 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Gma10g00280 610 CDD STKc_Nek 3 258 - -
Gma10g00280 610 SUPERFAMILY Protein kinase-like (PK-like) 1 314 IPR011009 -
Gma10g00280 610 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00280 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gma10g00280 610 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma10g00280 610 PANTHER SERINE/THREONINE-KINASE NEK4 1 599 - -
Gma10g00280 610 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 599 - -
Gma10g00280 610 MobiDBLite consensus disorder prediction 400 428 - -
Gma10g00280 610 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gma10g00280 610 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00280 Gma-Chr10 2571752 2577807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00280 10 289 MAP Kinase Kinase Kinase AT1G53570 29.000 2.83e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma10g00280 Pkinase 4.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00280 K08857 - gmx:100810347 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00280 10 2571752 2577807 Gma10g00280 10 2571752 2577807 ECH
Gma10g00280 10 2571752 2577807 Gma02g01321 02 15321396 15327427 GST
Gma19g01501 19 44365541 44373183 Gma10g00280 10 2571752 2577807 PCT
Gma03g01444 03 40658246 40664514 Gma10g00280 10 2571752 2577807 PCT
Gma10g00280 10 2571752 2577807 Gma19g01501 19 44365541 44373183 PCT
Gma10g00280 10 2571752 2577807 Gma03g01444 03 40658246 40664514 PCT