Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00249 ATGGCTGCGCCACTAGGCACTAGCCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACTTATAGTCTCTTCTGGCAACTTTGTCCACAACAAGGGATTCTGGTTTGGGGTGATGGTTACTACAATGGAGCAATTAAAACACGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAAGAGGCTTCTCTCCAAAGAAGCCAGCAACTTAGAGAACTCTATGAATCACTGTCCGCCGGAGAGACAAACccgccttgtcgccggccttgtgccgccttgtcgccTGAGGACTTAACAGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCACCTGGTGTTGGGTTGCCTGGAAAGGCATATGCGAGGAGGCAGCATCTATGGCTCACGGGTGCAAATGAGGTGGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGCTGCAGACTGTGGTGTGCATTCCTTTATTGGACGGTGTGGTTGAGTTTGGCACAATGGATAAGGTTCAAGAAGACCTCAGCTTCATCCAACACGTGGAGACCTTCTTCATAGACCACCTCAACCCTTTGCCACCGAAGCCTGCCTTGTCGGAGCACTCAACCTCAAACCCCGCCTCCTCCTCTGAACACATCCCCGCCGTCATGTATACCGTCGTGGATCCACTTGCCGCCAATCCCAACCTAAATGATGACATGGATGAGGATATTgaggaggaagaggaggaggaagaggaAGATGAGGAGCCGGAATCTGGTTCCGAAGACAAAGCCGGATACGGCATCGCTCGCCAAACTCCGACACCAGCCATGGCGGCAGAGCCCAGCGAGCTGATACAACTAGAGATGCCGGAGGACATCCGGCTTGGGTCTCCAAACGATGGGTCAAACAACTTAGACTCAGATTTTCACTTGCTGGCGGTGAGTCAGGGTGTTAACACAGCGGGGCAGGCTGAGTCAACTCGGAGGTGGGGCCTGAGTCAAAACCCCATGCAAGTTCAACTACCGACTTCAGCCCTTCATCCATTGGAAGACTTGACACAAGAGGACACTCACTACTCTCAAACAGTGTCCAACATCCTCCAAAACCAGTTCACACGGTGGCCAGCCTCACCCTCCTCCGTTGGATACGTCACATACTCCACGCAATCAGCATTCGCAaaatggagcagccgcgccagccaccaccacttccacccggcggcggcggcggacggcaccagccagtgcatcctcaagtacatcctcttcacggtcccgtacctccacgccaagaaccccggcgagagttctccccaaaccaccgccgcggataccaaactccgcggcaagggagcgccgcaggaggagctcagcgccaaccacgtgctggccgagcgccgccgtcgcgagaagctgaacGAGAGGTTCATAATCCTGCGGTCGCTGGTCCCCTTCGTGACCAAAATGGACAAGGCGTCGATATTGGGAGACACCATCGAGTACGTGAAGCAGTTGCGGCGGAAGATCCAGGAGCTCGAGGCGCGTAACCGCCAGATGACGGAGGCGGAACAACGTTCCAAGCTCCCAGAGATAGCAGTTCAGAGAACAAGTAGCAGTTCGAGCAAGGAGCAACAGAGGAGTGGGGTGACAATGACGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGTGGCGAAGGCGAAGGCGGTGGAGGCTGAGGCCACCACGTCGGTGCAAGTTTCGATCATAGAAAGCGACGCACTGTTGGAGATCGAGTGTCGTCACAAAGAAGGGTTGCTTCTGGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAAGTTATAGGGGTGCAGTCGTCGCTTAACAATGGGGTGTTCGTGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCAAACGGGAAGAAGGTCAGCATTGTGGAAGTGAAGAGGGCACTTAACCAAATTATACCCCATGCTGTTGACTAA 1980 0.4444 MAAPLGTSLQSMLQAAVQSVQWTYSLFWQLCPQQGILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPCRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHLWLTGANEVDSKTFSRAILAKLQTVVCIPLLDGVVEFGTMDKVQEDLSFIQHVETFFIDHLNPLPPKPALSEHSTSNPASSSEHIPAVMYTVVDPLAANPNLNDDMDEDIEEEEEEEEEDEEPESGSEDKAGYGIARQTPTPAMAAEPSELIQLEMPEDIRLGSPNDGSNNLDSDFHLLAVSQGVNTAGQAESTRRWGLSQNPMQVQLPTSALHPLEDLTQEDTHYSQTVSNILQNQFTRWPASPSSVGYVTYSTQSAFAKWSSRASHHHFHPAAAADGTSQCILKYILFTVPYLHAKNPGESSPQTTAADTKLRGKGAPQEELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRQMTEAEQRSKLPEIAVQRTSSSSSKEQQRSGVTMTEKRKVRIVEGVVAKAKAVEAEATTSVQVSIIESDALLEIECRHKEGLLLDVMQMLREVRIEVIGVQSSLNNGVFVAELRAKVKEHANGKKVSIVEVKRALNQIIPHAVD 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00249 659 Gene3D - 453 528 IPR036638 GO:0046983
Gma10g00249 659 MobiDBLite consensus disorder prediction 528 545 - -
Gma10g00249 659 Coils Coil 230 250 - -
Gma10g00249 659 PANTHER TRANSCRIPTION FACTOR TT8 8 656 - -
Gma10g00249 659 SMART finulus 460 509 IPR011598 GO:0046983
Gma10g00249 659 MobiDBLite consensus disorder prediction 235 257 - -
Gma10g00249 659 MobiDBLite consensus disorder prediction 515 549 - -
Gma10g00249 659 PANTHER TRANSCRIPTION FACTOR TT8 8 656 - -
Gma10g00249 659 Coils Coil 493 523 - -
Gma10g00249 659 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 188 IPR025610 -
Gma10g00249 659 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 520 IPR036638 GO:0046983
Gma10g00249 659 MobiDBLite consensus disorder prediction 431 451 - -
Gma10g00249 659 MobiDBLite consensus disorder prediction 228 274 - -
Gma10g00249 659 Pfam Helix-loop-helix DNA-binding domain 457 504 IPR011598 GO:0046983
Gma10g00249 659 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00249 Gma-Chr10 2289288 2298227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00249 292 656 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.669 1.14e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma10g00249 bHLH-MYC_N 1.5e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00249 - - gmx:100807157 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00249 10 2289288 2298227 Gma10g00249 10 2289288 2298227 ECH
Gma19g01469 19 43935069 43942948 Gma10g00249 10 2289288 2298227 PCT
Gma03g01406 03 40213203 40220723 Gma10g00249 10 2289288 2298227 PCT
Gma10g00249 10 2289288 2298227 Gma19g01469 19 43935069 43942948 PCT
Gma10g00249 10 2289288 2298227 Gma03g01406 03 40213203 40220723 PCT