Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00242 ATGACCATCTCAATGTTTATGTGCAGACTAACACAATCCATAATAAACGTACCTTGTAGTGGGAAAAAACTGAACATGAGGCAAATTGAGAAAGAGAAAATAGTGGTTGTAATGGGAGCCACTGGAGCAGGGAAGTCAAGGCTATCCATTGACCTAGCCACATGTTTTCCATCAGAAATCATAAACTCCGACAAAATCCAAGTCTACGAAGGCCTCGACATAGTTACAAACAAAATCTCCAAGGAAGACCAACGCGGTGTTCCGCACCACTTACTAGGAATAATAAACCCCAACATGGATTTCAGCGCCAACGATTTCTGTGACACGTCATCAGAAATTATTGCCTCGATCACGAGAAGCGAACGCCTTCCAATCATCGTTGGAGGCTCCAACTCGTATCTCGAGGCCCTGATCGATGACGATGATTACAAGTGTCGCTCGCGGTTCGATTTTCTGTGTCTCTGGGTTGACGTGGCAATGCCAGATCTGCAATCCTACGTGGCGGAGCGTGTCGACGACATGTTGTATAACGGAATGGTGGATGAGCTGAGACCGTTTTATAGTCCCAACGGGGATTACTCGCGAGGGGTAAGAAGGGCAATTGGGGTGCCAGAGTTCGACGAGTATTTTCGGAGGGAAGAAGAGGTTGTTGACGAGGAAACGAGGACGAGGTTGTTGGAAGAAGCGGTTAAGGAAATGAAACTGAACACGTGCAAGCTAGCCATGAAACAGTTGGGGAAGATTCGTAGGCTGAGGAACGTTAAGAGATGGGAGATTCATCGATTGGATGCCACGCCCGTGTTTCGGAGGCGTGGTGAAGAAGCGAACGAGGCGTGGAAGAAGCTGGTGGCAGAGCCTAGTGCTATGATCGTTGCTCGCTTTCTCTATAATAGTAACTCCAAAAATAATGCTACTAACGTTGTTTCTGGTTCTGGGCTTCGAGTGAAACCAGCTACTTCATCAGAGACTGTTCTGGCTGCGGCAACGTGGCTAGCTAGTTTTTTAGGTGTCGTTTTGGTGGGGAAGGACTTGTAA 1035 0.4754 MTISMFMCRLTQSIINVPCSGKKLNMRQIEKEKIVVVMGATGAGKSRLSIDLATCFPSEIINSDKIQVYEGLDIVTNKISKEDQRGVPHHLLGIINPNMDFSANDFCDTSSEIIASITRSERLPIIVGGSNSYLEALIDDDDYKCRSRFDFLCLWVDVAMPDLQSYVAERVDDMLYNGMVDELRPFYSPNGDYSRGVRRAIGVPEFDEYFRREEEVVDEETRTRLLEEAVKEMKLNTCKLAMKQLGKIRRLRNVKRWEIHRLDATPVFRRRGEEANEAWKKLVAEPSAMIVARFLYNSNSKNNATNVVSGSGLRVKPATSSETVLAAATWLASFLGVVLVGKDL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00242 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 141 IPR027417 -
Gma10g00242 344 PANTHER TRNA DIMETHYLALLYLTRANSFERASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 24 305 - -
Gma10g00242 344 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 259 - -
Gma10g00242 344 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 24 305 IPR039657 -
Gma10g00242 344 Gene3D - 31 295 IPR027417 -
Gma10g00242 344 Pfam IPP transferase 146 249 - -
Gma10g00242 344 Pfam IPP transferase 67 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00242 Gma-Chr10 2226056 2227261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00242 147 295 C2H2 Transcription Factor Family AT2G27760 33.143 4.61e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00242 K10760 - gmx:100803964 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00242 10 2226056 2227261 Gma10g00242 10 2226056 2227261 ECH
Gma10g00242 10 2226056 2227261 Gma02g01355 02 15697302 15698664 GST
Gma19g01462 19 43846581 43847831 Gma10g00242 10 2226056 2227261 PCT
Gma03g01399 03 40119512 40120441 Gma10g00242 10 2226056 2227261 PCT
Gma10g00242 10 2226056 2227261 Gma19g01462 19 43846581 43847831 PCT
Gma10g00242 10 2226056 2227261 Gma03g01399 03 40119512 40120441 PCT