Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00213 ATGATGGCGGAGGGGAAGGAAGAGAGTAAATTTAGCGAGGAAAGCGTGAAGCTGTTCGTGGGTCAAGTGCCGAAGCGCATGGCGGAAGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCTTTGGTTGACGAGGTCAACATCATCAGAGACAAAGCTAGTCGTGCCTCCCGAGGTTGTTGCTTTGTAATTTGTCCGTCCAGGGAAGAAGCGGATAAGGCGGTCAATGCTTGTCATAACAAGAAAACGCTCCCTGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGTGAATTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCTGATCTTTTCTCAATGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGgatgtgcatttttgaagtatgaaaccaaagaacaggcccttgctgctctTGAGGCAATCAATGGAAAACATACAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGATACTGAAAAGGAAAGGCTAGCTCGAAGGGCTCAAAAAGCACAGTCCCAAGTTTCTAACATGCCGCAGGCTGATCCTCAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCCGGGGGTTATGGGCTCATGGCATACCGTTTTCCACCAATGCAGAATCAACCAGGTTTCCATAACATGAACATGAACCAAGTAAATGCAGTGAGGCCTGATCTTGGTCACAGTGTGAATCCTAGAAATTATCATGCGCCTCCTGCAAGTTACATTGGCCCTTATCCTGCTGTGCCAGGTGTACAGCATCCAATGGTATATCCCAGAAGAATTGTAAGTCCGAGGCCGATGAGTAGTTCTTCTGGTTCTGTTTCACCTGCAGGTGGGAATAGCAACTCTTCATCTTCAGGTGCCAGTAAAAGTTCCAGTGGTCAAATTGAAGAATATGGAGACGAAGAGCTCGCAACCACATTTCAACCGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTCGATAAAGTAACAGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAATCTGCCATTAGTACGATGAATGGTTGTCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAGCAGAGTAAGATTTACTGA 1248 0.4215 MMAEGKEESKFSEESVKLFVGQVPKRMAEDEVLAMFKEFALVDEVNIIRDKASRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEDEVSDLFSMYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHTMEGSSVPLVVKWADTEKERLARRAQKAQSQVSNMPQADPQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMAYRFPPMQNQPGFHNMNMNQVNAVRPDLGHSVNPRNYHAPPASYIGPYPAVPGVQHPMVYPRRIVSPRPMSSSSGSVSPAGGNSNSSSSGASKSSSGQIEEYGDEELATTFQPFGRVLSAKIFVDKVTGVSKCFGFVSYDTPEAAQSAISTMNGCQLGGKKLKVQLKRDNKQSKIY 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00213 415 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 8 402 - -
Gma10g00213 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Gma10g00213 415 Gene3D - 100 191 IPR012677 -
Gma10g00213 415 SUPERFAMILY RNA-binding domain, RBD 11 99 IPR035979 GO:0003676
Gma10g00213 415 MobiDBLite consensus disorder prediction 303 340 - -
Gma10g00213 415 CDD RRM1_2_CELF1-6_like 17 93 - -
Gma10g00213 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Gma10g00213 415 SMART rrm1_1 336 404 IPR000504 GO:0003723
Gma10g00213 415 SMART rrm1_1 17 93 IPR000504 GO:0003723
Gma10g00213 415 SMART rrm1_1 105 180 IPR000504 GO:0003723
Gma10g00213 415 MobiDBLite consensus disorder prediction 306 337 - -
Gma10g00213 415 CDD RRM3_CELF1-6 340 404 - -
Gma10g00213 415 SUPERFAMILY RNA-binding domain, RBD 102 192 IPR035979 GO:0003676
Gma10g00213 415 Gene3D - 338 414 IPR012677 -
Gma10g00213 415 CDD RRM1_2_CELF1-6_like 105 180 - -
Gma10g00213 415 Gene3D - 3 99 IPR012677 -
Gma10g00213 415 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Gma10g00213 415 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Gma10g00213 415 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Gma10g00213 415 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Gma10g00213 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 331 408 IPR000504 GO:0003723
Gma10g00213 415 PANTHER RNA BINDING PROTEIN 8 402 - -
Gma10g00213 415 SUPERFAMILY RNA-binding domain, RBD 342 411 IPR035979 GO:0003676
Gma10g00213 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 402 IPR000504 GO:0003723
Gma10g00213 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Gma10g00213 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00213 Gma-Chr10 1964091 1968033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00213 343 414 Eukaryotic Initiation Factors Gene Family AT4G34110 37.500 5.02e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00213 K13207 - gmx:100796156 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00213 10 1964091 1968033 Gma10g00213 10 1964091 1968033 ECH
Gma10g00213 10 1964091 1968033 Gma02g01385 02 16001613 16005522 GST
Gma19g01956 19 48666428 48671007 Gma10g00213 10 1964091 1968033 PCT
Gma03g01918 03 45042555 45047637 Gma10g00213 10 1964091 1968033 PCT
Gma10g00213 10 1964091 1968033 Gma19g01956 19 48666428 48671007 PCT
Gma10g00213 10 1964091 1968033 Gma03g01918 03 45042555 45047637 PCT