Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00207 ATGATGAGTGGTTCTCCTTCTCCAAATTCAAAACAGAGAACATGCGACTATTGTGGGGACTTCACGGCTCTTCTGTATTGCAGTGCCGATTCTGCGAAGCTATGTTTCTTCTGTGACCGCAAAGTTCACTCCCCAAACCAGCTTTTCTCCAAGCACACGCGAGCGCAGCTCTGTGATTCGTGTGGAGATTCCCCTGCTTCGGTGCTCTGTTCTGCAGAGAACTCTGTTCTTTGCCATAACTGTGACTGCGAAAAGCACAAACATTTGGCGTCTGAAGTGCACCAACGAAAACCCCTCGAGGGGTTCTCGGGGTGCCCTTCTGTGACTGAGTTGTTAACGATTCTTGGTCTTTCTGAAAAATCTCTGCTTTCAAATGAGGGGACTTCCCAGATTGATTACGACCTTTCGGATTTGCACGTGTGGAGTGCTCCTTCTGTTAACGGTCTTGAATATTTGATCACTTCCACAGCTTCTTCTCATAAGAATCGTAAGAGTGCGTTTGGGAGACACAAAGAAGAGATTCTTAGTCAACTCCGTGAGCTAATAAAGTTGGAGCCCGACTTGATTCATGGAGAAGTAGATGCTGAGCGACAAGGGCAATTTGGAAATTTGCCTACTGGCTTTGAACGTGACGTGGAGGCTAGTATGTTTCCTTCATATGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCCTACAAATCAAATTGTTCCTTCCGATACGTCATCATTGAGAGATTTTGGCGAGGTAGTTTCAGCTGAAGATGGAAGTTTTACCATCCCTGGAACTGGAACTCAAGCCAATTTTAACAACGAAGGGAAACCATCAAACTCTTTTAACTCTGAAAACTTATCTCCTACTCCTAAAGCTACTCCATATGAGTTAACAAGTCATGAAAGAGATTCAGCATTATTGCGATACAGAGAGAAGAAGAAAACCAGAAGATATGACAAGCACATCAGATATGAATCACGAAAAGTTCGGGCAGAAAGCAGGATGAGAATTAAGGGTCGGTTTGTCAAAGATGAAACACAAAAATAA 1047 0.4394 MMSGSPSPNSKQRTCDYCGDFTALLYCSADSAKLCFFCDRKVHSPNQLFSKHTRAQLCDSCGDSPASVLCSAENSVLCHNCDCEKHKHLASEVHQRKPLEGFSGCPSVTELLTILGLSEKSLLSNEGTSQIDYDLSDLHVWSAPSVNGLEYLITSTASSHKNRKSAFGRHKEEILSQLRELIKLEPDLIHGEVDAERQGQFGNLPTGFERDVEASMFPSYEAGVFCWHGESSDPTNQIVPSDTSSLRDFGEVVSAEDGSFTIPGTGTQANFNNEGKPSNSFNSENLSPTPKATPYELTSHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFVKDETQK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00207 348 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Gma10g00207 348 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Gma10g00207 348 MobiDBLite consensus disorder prediction 260 294 - -
Gma10g00207 348 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 10 345 - -
Gma10g00207 348 CDD Bbox1_BBX-like 15 57 - -
Gma10g00207 348 SMART bboxneu5 58 99 IPR000315 GO:0008270
Gma10g00207 348 SMART bboxneu5 10 57 IPR000315 GO:0008270
Gma10g00207 348 ProSiteProfiles Zinc finger B-box type profile. 53 99 IPR000315 GO:0008270
Gma10g00207 348 MobiDBLite consensus disorder prediction 257 298 - -
Gma10g00207 348 Pfam CCT motif 302 344 IPR010402 GO:0005515
Gma10g00207 348 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 10 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00207 Gma-Chr10 1889480 1891888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00207 11 317 C2C2-CO-like Transcription Factor Family AT2G47890 37.267 8.22e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma10g00207 zf-B_box 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00207 - - gmx:100798117 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00207 10 1889480 1891888 Gma10g00207 10 1889480 1891888 ECH
Gma10g00207 10 1889480 1891888 Gma02g01392 02 16088863 16091850 GST
Gma19g01970 19 48783459 48788096 Gma10g00207 10 1889480 1891888 PCT
Gma03g01928 03 45154402 45158088 Gma10g00207 10 1889480 1891888 PCT
Gma10g00207 10 1889480 1891888 Gma19g01970 19 48783459 48788096 PCT
Gma10g00207 10 1889480 1891888 Gma03g01928 03 45154402 45158088 PCT