Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00201 ATGGACTTGTACGGTCGGGGTCAGGCCAGAAATGGATCCAACCCGGTGAACCAGCCTGAATGGCGCTCGCCGGGCACCGACACTGGCCTCGAAGAATCGATGTGGCATTTAACGCTGGGTGGTGGTGAATCTTACCCGGAGCGACCCGGTGTGCCCAATTGTGTGTATTACATGCGAACCGGTGTGTGCGGATATGGTAGCAGGTGTCGTTATAATCACCCTCGCGATCGTGCTGCGGTTGCTGCGGCAGTAAGAGTTACAGGGGACTACCCAGAAAGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAGACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAACCCAAGCTCCATTAAATATTTATGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTAAAAACGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAACTTCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCCACGGTTCCTCTGCCTGAACAGTATGGAGGAGCATCCACAAGCTTGAGAGTGGCCAGGCCTCCTGTATTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGCGCTCAACCTACTGTTGGGGCCACTTCTTTATATGGAGTGACCCAGTTGTCATCCCCAACATCAGCTTTTGCTAGACCATATACTCCTCTGTCCTCTACTACCGGCCCTTCAGGAAGCAATCTGAAGGATCAATTTTTTCCTGAAAGACCCGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCGGGATCATATTGTGGCACGGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGGTGCACTAG 1032 0.4932 MDLYGRGQARNGSNPVNQPEWRSPGTDTGLEESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVAAAVRVTGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLTQAPLNIYGYPLRPGEKECSYYLKTGQCKFGISCKFHHPQPAGTSLPTSAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPVLPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVLSPGAQPTVGATSLYGVTQLSSPTSAFARPYTPLSSTTGPSGSNLKDQFFPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVARPLLSPVGLPLRPVH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00201 343 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gma10g00201 343 PANTHER PROTEIN PHOSPHATASE RELATED 1 341 - -
Gma10g00201 343 SUPERFAMILY CCCH zinc finger 300 324 IPR036855 GO:0046872
Gma10g00201 343 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Gma10g00201 343 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gma10g00201 343 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Gma10g00201 343 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Gma10g00201 343 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Gma10g00201 343 MobiDBLite consensus disorder prediction 1 28 - -
Gma10g00201 343 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Gma10g00201 343 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Gma10g00201 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gma10g00201 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Gma10g00201 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Gma10g00201 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Gma10g00201 343 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 341 - -
Gma10g00201 343 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Gma10g00201 343 Gene3D - 47 122 - -
Gma10g00201 343 Gene3D - 279 330 - -
Gma10g00201 343 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Gma10g00201 343 MobiDBLite consensus disorder prediction 10 24 - -
Gma10g00201 343 Gene3D - 127 174 - -
Gma10g00201 343 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00201 Gma-Chr10 1815819 1819290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00201 1 341 C2H2 Transcription Factor Family AT5G18550 51.099 1.16e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma10g00201 zf-CCCH 7.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00201 - - gmx:100805017 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00201 10 1815819 1819290 Gma10g00201 10 1815819 1819290 ECH