Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00200 ATGGACTTCTACGGTCGGGGCCCCGCGAGAAATGTACACAACCCAGTGAACCAACCCGAATGGCGCTCACCGGGCACCGACACTGGTCTCGAAGAATCGATGTGGCATTTGACGCTGGGTGGTGGTGGCGAATCTTACCCGGAGCGACCCGGTGTGCCTAATTGTGTGTATTACATGCGGACTGGGGTGTGTGGATATGGTGGCAGGTGTCGTTACAATCACCCTCATGATCGTGCTGCGGTTGTTGCGGCGGTAAGAGTTACAGGGGACTACCCAGAACGGTTGGGGGAACCTCCGTGTCAGCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCTAAAAATGGAGGTGAATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTACGGTCGGATGAGAAAGAATGCTCCTACTATTTGAAAACAGGGCAGTGCAAATATGGTATATCTTGTAAATTCCATCATCCTCAACCGGCGGGCACATCATTGCCAGCATCTGCTGCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGCCTGAACAGTATGTAGGAGCTTCCTCGAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTATTTCTTTCCCCAGGGGTTGTCCAATTTCCTGGATGGAATCATTATTCGGCACTTCCTGGCACTCAACCTGGTGTTGGGGCTACATCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACACTGCTGCCCTCTTCCACTGGCCTTTCAGGAAGCAACCTGAAGGAACAATTATATCCCAAAAGACCTGGTGAACCAGATTGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCAATATCATCATCCTCAGGATCATGTTGTGGCACAGCCACTTCTTAGCCCTGTTGGACTTCCTTTACGTCCGGGGTTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAATTCGGCTCCACGTGCAAATTTGACCATTCTTTGGGATCTATGAGATACAGTCCATCGGCATCTTCTCTCATTGATGTGCCAGTTACTCCATACCTAGTTGGGTCGTTGCTGTCTCAATTGGTTCCTTCAACATCAGCGGACCTTCGGCCTGAACTGGCCTGA 1218 0.4828 MDFYGRGPARNVHNPVNQPEWRSPGTDTGLEESMWHLTLGGGGESYPERPGVPNCVYYMRTGVCGYGGRCRYNHPHDRAAVVAAVRVTGDYPERLGEPPCQQYYLKTGTCKFGASCKFHHPKNGGEYLSQAPLNVYGYPLRSDEKECSYYLKTGQCKYGISCKFHHPQPAGTSLPASAAQFYQQVQSPTVPLPEQYVGASSSLRVARPPILPGSYVQGAYGPVFLSPGVVQFPGWNHYSALPGTQPGVGATSLYGVTQLSSPTSAFARPYTLLPSSTGLSGSNLKEQLYPKRPGEPDCQYYLRTGDCKFGLACQYHHPQDHVVAQPLLSPVGLPLRPGLQPCAFYLQNGHCKFGSTCKFDHSLGSMRYSPSASSLIDVPVTPYLVGSLLSQLVPSTSADLRPELA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00200 405 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Gma10g00200 405 SMART c3hfinal6 336 363 IPR000571 GO:0046872
Gma10g00200 405 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Gma10g00200 405 SMART c3hfinal6 94 122 IPR000571 GO:0046872
Gma10g00200 405 SMART c3hfinal6 292 319 IPR000571 GO:0046872
Gma10g00200 405 SMART c3hfinal6 143 168 IPR000571 GO:0046872
Gma10g00200 405 Gene3D - 123 176 - -
Gma10g00200 405 ProSiteProfiles Zinc finger C3H1-type profile. 94 123 IPR000571 GO:0046872
Gma10g00200 405 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 394 - -
Gma10g00200 405 SUPERFAMILY CCCH zinc finger 53 78 IPR036855 GO:0046872
Gma10g00200 405 SUPERFAMILY CCCH zinc finger 297 320 IPR036855 GO:0046872
Gma10g00200 405 MobiDBLite consensus disorder prediction 1 28 - -
Gma10g00200 405 Gene3D - 290 373 - -
Gma10g00200 405 SUPERFAMILY CCCH zinc finger 339 367 IPR036855 GO:0046872
Gma10g00200 405 ProSiteProfiles Zinc finger C3H1-type profile. 336 364 IPR000571 GO:0046872
Gma10g00200 405 ProSiteProfiles Zinc finger C3H1-type profile. 292 320 IPR000571 GO:0046872
Gma10g00200 405 Gene3D - 44 122 - -
Gma10g00200 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 340 362 IPR000571 GO:0046872
Gma10g00200 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 168 IPR000571 GO:0046872
Gma10g00200 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 122 IPR000571 GO:0046872
Gma10g00200 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 319 IPR000571 GO:0046872
Gma10g00200 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Gma10g00200 405 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Gma10g00200 405 PANTHER PROTEIN PHOSPHATASE RELATED 1 394 - -
Gma10g00200 405 SUPERFAMILY CCCH zinc finger 142 169 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00200 Gma-Chr10 1809951 1813886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00200 20 404 C2H2 Transcription Factor Family AT5G18550 50.244 1.85e-119 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma10g00200 zf-CCCH 3.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00200 - - gmx:100812475 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00200 10 1809951 1813886 Gma02g01399 02 16165240 16169130 GST