Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00188 ATGTTGAAGACGACGATAAAGTTAAAGCCAATGGTGGAAACCAACGAGTCTCATGTTGTGAAGGAGATGCATTGCGTCGTGTGCAAGGAAGCCTTTGAGTTAGGAGTGTTGGCGCGTGAGATGCTGTGCAAGCTCCATTACCACTTTGATTGCATTCTCCTATGGCTCTCAATGCGAAACTCGTGTCCTGTGTGTCACTATGAGCTGTCGTCGGAGCAGCCCACATATAAAAATAGAGTCACTGGTAAGATTGAGGAGGTGGTTATAAGGTTGACCATATGGAGGTTGTTGAGTAGCAGATTCGCTGTTAGGAGGCTTGCCAACGAGAACCACTTGTCGATGATGTACACCTGTTTTAGTTAG 363 0.4628 MLKTTIKLKPMVETNESHVVKEMHCVVCKEAFELGVLAREMLCKLHYHFDCILLWLSMRNSCPVCHYELSSEQPTYKNRVTGKIEEVVIRLTIWRLLSSRFAVRRLANENHLSMMYTCFS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00188 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 83 IPR013083 -
Gma10g00188 120 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 3 117 - -
Gma10g00188 120 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 117 - -
Gma10g00188 120 SUPERFAMILY RING/U-box 10 76 - -
Gma10g00188 120 Pfam Ring finger domain 24 65 IPR001841 -
Gma10g00188 120 ProSiteProfiles Zinc finger RING-type profile. 25 66 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00188 Gma-Chr10 1723757 1724119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00188 10 77 C3H Transcription Factor Family AT5G01980 44.118 2.39e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00188 - K11982 vun:114185595 144.436