Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00176 ATGAGCGGAGCGAAGGGGAAGAAGAAGGGAGCGAGCTTTGTGATCGATTGCGCGAAGCCGGTGGAGGATAAAATTATGGACATTGCTTCTCTGGAGAAGTTCCTTCAGGAGAGGATTAAGGTTGGCGGCAAGGCCGGTGCACTCGGCGATTCCATTACTGTCACTAGGGACAAGAGCAAGATCACCGTCACCTCCGACAGCAACTTCTCTAAACGGTATCTGAAATATTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGCGTGATTGCATCCAACAAGGAGCGGAGTGTCTATGAATTGAGATACTTCAACATCGCTGAGAACGAGGGTGAAGAGGAAGACTGA 360 0.4889 MSGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSITVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKERSVYELRYFNIAENEGEEED 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00176 119 Pfam Ribosomal L22e protein family 9 117 IPR002671 GO:0003735|GO:0005840|GO:0006412
Gma10g00176 119 Gene3D - 1 119 IPR038526 -
Gma10g00176 119 PANTHER 60S RIBOSOMAL PROTEIN L22 2 119 IPR002671 GO:0003735|GO:0005840|GO:0006412
Gma10g00176 119 PANTHER 60S RIBOSOMAL PROTEIN L22-2-LIKE 2 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00176 Gma-Chr10 1615435 1617505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00176 4 119 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.069 4.15e-63 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00176 K02891 - gmx:100305544 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00176 10 1615435 1617505 Gma10g00176 10 1615435 1617505 ECH
Gma02g00172 02 1593661 1595202 Gma10g00176 10 1615435 1617505 ECH