Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00164 ATGAACAACCTCACACTTGCATCCATTCTGACCGTGATTTCTTCTCTACTATTCTTTGGAACAACTCATTTAACCAACACCCAAACAACAAGAGTCCCAGATCAAAAACATAAACACCTCCATTTCCAAAAGCACATACAAGTAGTAGCCCAATCCACATGCGAAGGAACACTCTACCCAGACCTATGTGTCTTAACACTAGCCACATTCCCAGATCTCACAACAAAATCTGTCCCACAAGTGATATCCTCAGTGGTCAACCATACCATGTACGAGGTAAGATCAACGTCCTACAACTGCAGCGGCCTCAAAAAGATGCTCAAAAACCTCAACCCACTCGACCAGAGAGCCCTCGACGACTGTCTCAAACTGTTTGAAGACACCAGCGTCGAGCTCAAAGCCACCATCGACGATCTCTCCATCAAGAGCACCATAGGGTCTAAACTGCACCATGACTTGCAGACTCTGCTGAGTGGAGCAATGACCAACTTGTACACGTGCCTCGATGGCTTTGCGTACAGCAAAGGGCGCGTGGGGGACAGAATCGAGAAGAAGCTGCTTCAAATATCGCATCACGTGAGCAACTCGTTGGCCATGCTGAACAAAGTGCCTGGAGTTGAGAAATTAACAACTTCTTCGGAATCTGATGAGGTGTTTCCAGAATATGGAAAGATGCAAAAGGGGTTCCCTTCGTGGGTGTCCTCTAAAGACCGAAAGCTTCTTCAAGCTAAAGTGAATGAGACCAAGTTCAATCTTGTTGTTGCCAAAGATGGCACTGGCAACTTCACCACTATAGGGGAAGCACTGTCTGTGGCTCCCAACTCAAGCACAACTAGGTTTGTGATACACGTAACGGCGGGGGCATACTTCGAGAATGTGGAAGTGATAAGGAAGAAGACGAATCTAATGTTTGTTGGAGACGGTATTGGAAAGACAGTAGTGAAAGGCAGTAGGAATGTTGAGGACGGGTGGACCATTTTTCAATCTGCTACTGTTGCTGTTGTAGGAGCAGGATTCATAGCAAAGGGTATAACATTTGAGAATTTCGTTGGCTACCAGGACACTCTCTACGTCCATTCCCTGCGCCAATTCTACCGTGAACGTGACATTTATGGCACTGTAGACTTCATTTTCGGCAATGCAGCTGTGGTATTCCAAAACTGCAACTTATACGCACGCAAGCCAAACGAAAATCAGAAGAACTTGTTCATGGCACAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCTTGAACTGCAAGATTGCAGCTGCTGCAGATTTGATCCCTGTGAAATCCTCGTTCAAGAGCTACCTAGGACGTCCTTGGAAAATGTACTCTATGACTGTTGTGTTAAAATCTTACGTGGATATAGACCCAGCAGGGTGGTTGGAATGGAATGAAACATTTGCATTGGATACGTTGTATTATGGGGAGTACATGAATAGGGGTCCATGTTCAAACACAAGTGGTAGGGTTACGTGGCCAGGTTATAGGGTCATTAACAGCTCCATTGAGGCAAGCCAATTCACAGTTGGACAGTTTATTCAAGACAATGATTGGTTGAACAACACTGGCATCCCATTCTTCTCTGGTTTGAGTTGA 1611 0.4562 MNNLTLASILTVISSLLFFGTTHLTNTQTTRVPDQKHKHLHFQKHIQVVAQSTCEGTLYPDLCVLTLATFPDLTTKSVPQVISSVVNHTMYEVRSTSYNCSGLKKMLKNLNPLDQRALDDCLKLFEDTSVELKATIDDLSIKSTIGSKLHHDLQTLLSGAMTNLYTCLDGFAYSKGRVGDRIEKKLLQISHHVSNSLAMLNKVPGVEKLTTSSESDEVFPEYGKMQKGFPSWVSSKDRKLLQAKVNETKFNLVVAKDGTGNFTTIGEALSVAPNSSTTRFVIHVTAGAYFENVEVIRKKTNLMFVGDGIGKTVVKGSRNVEDGWTIFQSATVAVVGAGFIAKGITFENFVGYQDTLYVHSLRQFYRERDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFMAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKSYLGRPWKMYSMTVVLKSYVDIDPAGWLEWNETFALDTLYYGEYMNRGPCSNTSGRVTWPGYRVINSSIEASQFTVGQFIQDNDWLNNTGIPFFSGLS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00164 536 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 204 IPR035513 -
Gma10g00164 536 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Gma10g00164 536 Pfam Pectinesterase 349 520 IPR000070 GO:0030599|GO:0042545
Gma10g00164 536 SUPERFAMILY Pectin lyase-like 249 534 IPR011050 -
Gma10g00164 536 CDD PMEI-like_3 52 205 - -
Gma10g00164 536 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 205 IPR035513 -
Gma10g00164 536 PANTHER PECTINESTERASE 9 351 - -
Gma10g00164 536 PANTHER PECTINESTERASE 349 532 - -
Gma10g00164 536 PANTHER PECTINESTERASE 9 351 - -
Gma10g00164 536 PANTHER PECTINESTERASE 349 532 - -
Gma10g00164 536 Gene3D - 245 348 IPR012334 -
Gma10g00164 536 Gene3D - 349 535 IPR012334 -
Gma10g00164 536 Pfam Plant invertase/pectin methylesterase inhibitor 51 199 IPR006501 GO:0004857
Gma10g00164 536 TIGRFAM PME_inhib: pectinesterase inhibitor domain 43 202 IPR006501 GO:0004857
Gma10g00164 536 SMART PMEI_2 45 199 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00164 Gma-Chr10 1529009 1533308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00164 74 531 Carbohydrate Esterase AT4G02320 50.803 1.40e-173 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00164 K01051 - gmx:100802881 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00164 10 1529009 1533308 Gma10g00164 10 1529009 1533308 ECH
Gma10g00164 10 1529009 1533308 Gma02g00159 02 1515643 1520376 GST
Gma19g02019 19 49156773 49158685 Gma10g00164 10 1529009 1533308 PCT
Gma03g01988 03 45532993 45535137 Gma10g00164 10 1529009 1533308 PCT
Gma10g00164 10 1529009 1533308 Gma19g02020 19 49168732 49173987 PCT