Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00140 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGGAGGTGGACAGCAGAGGAGGATGAGACCTTGGCAAAATACATTCAGACCAACGGGGAAGGTTCTTGGAGGTCATTGCCTAAAAATGCAGGATTATTAAGGTGCGGGAAGAGTTGCAGGCTGAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGGAACATTTCTGCTGAAGAGGAAAATACAATCGTTAAGTTGCACGCTTCTTTTGGTAACAGGTGGTCTTTGATAGCAAGTCATTTACCAGGAAGAACGGACAACGAGATAAAAAACTACTGGAATTCTCACCTCAGCAGAAAAATTTACAGTTTCCCAGGTGCAAGTGCAGGGATCATGGATACACCTAAAGTAGCGTCTATTCCTCCCAAGCTCAAAGGTGGTAGAACAAGCCGTTGGGCCATGAATAAGAACAAAACCTACACCCAAAATGTCAATGATGCAATTAACCAGAGACCCAAACAAACGTTTACTCAACCAAATAGTGATTTCACGGTCTTGGACGCTGACGTGGCAGATGTGAATGAGCCAAGAATAGAGGAGCTAGAGGCAGAGGTAAATAAATGTGACAGGAGCGTTGATGAAAGTAACGATGAAGACATCTTGGGACTGTGCCAAATGGAGGGCATTAGTGACATTTTGGAAAGTTGGCTTCCGGAAACAACATGTGTGGTTTGGGACTTGAGTGAAGAGATAGACAACAATGACATGGTAGTGAGGGTGAGTGATGCGTGTCGCGACAAAATGGCATCGAGTGGAGAGGGGTATTCATGCTCTTCTTCCATGGCATTGGATCAACACTGGGATTGGGAGAGTGTCATAGAGTTTAATAACGTTGTCGAGTCCGAAGCTTGTAATAATTGGGAGCAACAAGAAAAACCGCTCACTTGGCCGTGGGAGGACGATGCTTGGGAAAGCCAAAGCAAAAATTTGGGAGAGACAGATACTCAGATGCAAAACGACATGGTTGATTGGTTCCTCTCTTGA 1029 0.449 MGRAPCCEKVGLKKGRWTAEEDETLAKYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFPGASAGIMDTPKVASIPPKLKGGRTSRWAMNKNKTYTQNVNDAINQRPKQTFTQPNSDFTVLDADVADVNEPRIEELEAEVNKCDRSVDESNDEDILGLCQMEGISDILESWLPETTCVVWDLSEEIDNNDMVVRVSDACRDKMASSGEGYSCSSSMALDQHWDWESVIEFNNVVESEACNNWEQQEKPLTWPWEDDAWESQSKNLGETDTQMQNDMVDWFLS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00140 342 Gene3D - 11 67 - -
Gma10g00140 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma10g00140 342 CDD SANT 16 61 IPR001005 -
Gma10g00140 342 PANTHER - 2 322 - -
Gma10g00140 342 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 322 - -
Gma10g00140 342 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma10g00140 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma10g00140 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma10g00140 342 Gene3D - 71 116 - -
Gma10g00140 342 CDD SANT 71 112 IPR001005 -
Gma10g00140 342 SMART sant 13 63 IPR001005 -
Gma10g00140 342 SMART sant 66 114 IPR001005 -
Gma10g00140 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma10g00140 342 Coils Coil 193 213 - -
Gma10g00140 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma10g00140 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00140 Gma-Chr10 1326116 1330929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00140 1 179 MYB Transcription Factor Family AT5G49330 61.111 3.90e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g00140 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00140 K09422 - gmx:100793350 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00140 10 1326116 1330929 Gma10g00140 10 1326116 1330929 ECH
Gma10g00140 10 1326116 1330929 Gma02g00134 02 1299497 1303578 GST
Gma19g02043 19 49343738 49348316 Gma10g00140 10 1326116 1330929 PCT
Gma03g02009 03 45691973 45695753 Gma10g00140 10 1326116 1330929 PCT
Gma10g00140 10 1326116 1330929 Gma19g02043 19 49343738 49348316 PCT
Gma10g00140 10 1326116 1330929 Gma03g02009 03 45691973 45695753 PCT