Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00134 ATGATGGAAGCCACTTACCCATCGCCAATGTTTCGCGGTGTTCGTTTCGTTCTCCGTGGCTTCAATCCCGTCGCCCAAAACCAGATCCGGTTCAAGCTTGCCAATGGCGGTGGAGTCGACGTAGGACAGTACGGCGGGAGTTGCACGCATGTCATTGTCGATAACGTTGCTTATGACGATCCTGTGTGTGTTGCTGCCAGAAATGATCGGAAGACGGTTGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCTGTTGATGCTACTTCGGTTATGTACAGACCTCTTAAAGACTTAGATGGAATACCAGGTGCGAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTAATGGGTGCACAGTTTTCTAAGCCTTTGGTGGCAAACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGAGAGAAGTATGAGCTTGCCAAGAAATTGGGCACAATAAAGTTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCCGAAGACAAATATAACAAGAGTGGTTTTGAACTAGAGATGATGGAGGAAGAGGCTAAGGATTCTGAGCAAGAGGCTGAAGATTCTAAGCTGGGACAATCAGGGGGAAGAAAAAGAAAACAAAGCCCCCTTAGTTCGAAAATTGGTATCGCTGCTACTCCTGGATTGTCCAAATCAGCAACAGAGGCATCAAACGCCTTACCAGATTCTACTGGTCCACAGGTCTTGCCAAATGTCAATAATGGTGAAAACTCTTTAACCGTTCCAGGAAATAAGAGCAGACCTGATCAAGGCTCGAGCTTTCATAATGTTGATGACTCAAAGGTAAGCTATCAGGCTGCTGATATTTCTAGACATTCTACATCATGCCAGTTACCTAACAAATATGTAAAGACCAGTGAGTCTAAGAATGCTGATTCTCCAAAGGCACCTGGCTGCCAGGATCTTGGCAATATGGGAAATACAAATTCATCTGATCAGCAGCCTGATCTGAATGGCGACATCTCAGAGTCTAAGAAGGTGGCAAGTGATTTGAGAGAAACTTCTGCAAGTGCTGCTGGAGTTGCACATTCAAATGAAAAGCTTAGAACTGCAAGTTATTCTAGGAAGAACCAAAAAGGATTTACTCTTCCAAGGATCTTAGATGAAAGCTCAGGTAGAGAAGGCAACAACTGTGATAACAGTAAGGTTCAAAAGGCCAGTGAGGGTGTCAAATCTACCAGTGTTGAAGTTTCTGGGAAAGGAAATGATTTTGTTAAAGATGAGCCAATTAGTTTATTGCCTCAAAAGAGGATAAACAAAGCTTCTTTTACTAAATTAAAATCAAGAAAGAAGACTTCAGTCCCATCAGCTAATGGTAAATCTCAAGGATTAAAAGTGACATCTCAGGTTGATGAGCCACCTGAAGCTGATGACTACTTTTCTATAGGTAAAGATGGTATAAATAACTCAAACACTTGCTTAGTTTCGAAACCTTCAGGCTCTACCTCCAACTCACTGGCATTTGATGAGCTTCTTTCAAGAAATGCAAGCCCAGAATCTGTTCAGTGTGATAATGTCTGTCAGAATTCATCAAAAATGGCTGTTCAGAGCTTAAGTGAGTCTAAAATTAATGGCAAACCTGATATCACAGGTTCTGGAATGCAACAAGTTGGTGGTAATGAAGTAGAGCAACATACTGTCACTAAAAATCTTGATTGTTCATCTCTGGGAAACAAAAAATCATGTAATGTGGAATCTGCTGGTTGTACTAAATTGGATTTAGGCACCGAAGAAAGTAATAAACTGGTTAGCAAATCACCCCGAAAGAAGTCGGTTGCCAAGAGAAGTTTGGGTTCTAAACCTAAAGTAGGTGCCACTGCTAAACAGAAAAAATCACTTTCCCTGACTAAAACTACCCTGCAAGGTGAAGGTGAAACTTTTTCCAGTGGAAGCAAAGAGGTTGCAACTGGTGATGCGAGGATGCATCAGGGATGCCCCCAAATCTTTGATGTTAATAAAACAACAGAGCAAGAAACAGTTAGTAAAAATGCTGGTGACAGAACTGAGTTTTTGGACGATGAAACTGAGGCTCCAGATGACAAATGTGAATATGAGTTAGGAATGGCCCTTGACGAAGACTTGGTTCATCTTTCAAAAAAGCCAGATACAGCAAAAGAAGAGAAGTCAGAAGCAACTTACCCTGCAACAAAATGTGAAGAGGCAATGCCTCCTAAGAATGGCACAAATAAAACTGAAAAACAGAAAACATCTTCACTGGCAGTAAAGCATCAAGCTAGAAAACTTCCTGCTGGTAAAGTCAAGGCCACAGTTAGTAAATATGCAGAAGATGATGGTGACAGAACTGAGCTTGTGGGGGATGAAACCGAGGCTCCAGATGGCAAATGTGAACCCGAGTTACGAATGGCACTCGATGAAGAATCTCATCTTTCAAAAAAATCAGATACAGCAACAGAAGAGAAGTCGGAAGTAATTTGCCCTGAAACAAAATGTGAAGAGCCAATGCCTCCTAAGAAAGGCACAAAAAAAACTGAAAAACAGAAGCCATCTTCACTGGTAGTAAAGAATCAAGCAAGAAAACGTCCTGCTGGTAAAACCAAGGCCAAAGTTGCCAAGGAATTACCAAAATCTATGGCAGTATATGGGGAGAAGATTCCTAATGAGACCGAGCATGAGCCAGAGATAGAAACCATGGAAGAAATGCCCCTTCCTGATGATAAAAGTGACCAGCCAGCCATTCAAAGAAATAAGTCAGAGAATTTTGCTGAAGAGAAGGAGAATAGGCCAATTGATGGAGAGCAGGGCAAAAGCAATGGCAGTTCAACTATTAAATCTAGTGTAAGGACAGCAAAGATCAAGTCTAAGAAATCGGGGCTCAATCCATCTATAACAGAATCTAACACGAGAGTGAAAACTGAAGCCGCATGTTTTATATTAAGTGGGCATCGTCTACAGAGAAAAGAGTTTCAACAAGTAATCAAGCGATTAAAAGGAAGGGTTTGCCGGGATTCTCACCAGTGGTCATATCAGGCGACACACTTCATAGCTCCAGACCCCATACGCAGGACTGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTAAAAACTGATTTCCTAACTGCCAGTAGCCAGGCAGGAAAATTGTTGGCAGAGGAGCCTTATGAGTGGCACCAGAATGGTTTCAGTGAGGATGGCACAATTAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGAGCCTTCTATGGAATGCGTATTGTTGTATACGGCGATTGCATTGCCCCACCTTTGGATACTCTGAAACGTGTCATTAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCTCCTTATACTCGCTTCCTTAGTACAGGAATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGACATGTGGGTGCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTACTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTTGAGAGACATGTATTATATGGCACTCATGCTTGGGCAGAGAGATCATTTGATAAACTTAAAAGCAAGGCAGAAGAGATTGTTGAAGAACTCGTTGCTCCTGAGGATTCTGGTGATGATCATGATCATGATATAATTTGCAAAGTATGTGGATCCCGCGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTCGGATGTGGAATCGGTACTCATATCGATTGCTGCGATCCTCCTCTAACACATGTACCTGAGGAAGATTGGTTTTGCCCAAAATGCAGTAGCAACCGAAACTGCTCAAACAATCCCAGTAAAAGGAAAAAGACTGTTTTATCTTCATCAGTGTATGTGAGGTGA 3957 0.4236 MMEATYPSPMFRGVRFVLRGFNPVAQNQIRFKLANGGGVDVGQYGGSCTHVIVDNVAYDDPVCVAARNDRKTVVTALWVEHSADIGMPVDATSVMYRPLKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKLGTIKLVNHRWLEDCLKEWVLLPEDKYNKSGFELEMMEEEAKDSEQEAEDSKLGQSGGRKRKQSPLSSKIGIAATPGLSKSATEASNALPDSTGPQVLPNVNNGENSLTVPGNKSRPDQGSSFHNVDDSKVSYQAADISRHSTSCQLPNKYVKTSESKNADSPKAPGCQDLGNMGNTNSSDQQPDLNGDISESKKVASDLRETSASAAGVAHSNEKLRTASYSRKNQKGFTLPRILDESSGREGNNCDNSKVQKASEGVKSTSVEVSGKGNDFVKDEPISLLPQKRINKASFTKLKSRKKTSVPSANGKSQGLKVTSQVDEPPEADDYFSIGKDGINNSNTCLVSKPSGSTSNSLAFDELLSRNASPESVQCDNVCQNSSKMAVQSLSESKINGKPDITGSGMQQVGGNEVEQHTVTKNLDCSSLGNKKSCNVESAGCTKLDLGTEESNKLVSKSPRKKSVAKRSLGSKPKVGATAKQKKSLSLTKTTLQGEGETFSSGSKEVATGDARMHQGCPQIFDVNKTTEQETVSKNAGDRTEFLDDETEAPDDKCEYELGMALDEDLVHLSKKPDTAKEEKSEATYPATKCEEAMPPKNGTNKTEKQKTSSLAVKHQARKLPAGKVKATVSKYAEDDGDRTELVGDETEAPDGKCEPELRMALDEESHLSKKSDTATEEKSEVICPETKCEEPMPPKKGTKKTEKQKPSSLVVKNQARKRPAGKTKAKVAKELPKSMAVYGEKIPNETEHEPEIETMEEMPLPDDKSDQPAIQRNKSENFAEEKENRPIDGEQGKSNGSSTIKSSVRTAKIKSKKSGLNPSITESNTRVKTEAACFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDFLTASSQAGKLLAEEPYEWHQNGFSEDGTINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTRFLSTGIDYAVVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWAERSFDKLKSKAEEIVEELVAPEDSGDDHDHDIICKVCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLTHVPEEDWFCPKCSSNRNCSNNPSKRKKTVLSSSVYVR 1318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00134 1318 MobiDBLite consensus disorder prediction 406 432 - -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 299 326 - -
Gma10g00134 1318 Pfam BRCA1 C Terminus (BRCT) domain 999 1063 IPR001357 -
Gma10g00134 1318 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1293 - -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 730 747 - -
Gma10g00134 1318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1228 1316 IPR013083 -
Gma10g00134 1318 Gene3D BRCT domain 1 95 IPR036420 -
Gma10g00134 1318 Gene3D BRCT domain 1105 1206 IPR036420 -
Gma10g00134 1318 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Gma10g00134 1318 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Gma10g00134 1318 SUPERFAMILY BRCT domain 7 92 IPR036420 -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 952 983 - -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 730 983 - -
Gma10g00134 1318 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 790 868 - -
Gma10g00134 1318 ProSiteProfiles BRCT domain profile. 996 1078 IPR001357 -
Gma10g00134 1318 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1293 IPR044254 -
Gma10g00134 1318 Coils Coil 198 218 - -
Gma10g00134 1318 ProSiteProfiles Zinc finger PHD-type profile. 1240 1296 IPR019787 -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 461 481 - -
Gma10g00134 1318 Pfam PHD-finger 1242 1295 IPR019787 -
Gma10g00134 1318 Pfam twin BRCT domain 111 175 IPR001357 -
Gma10g00134 1318 SUPERFAMILY FYVE/PHD zinc finger 1231 1299 IPR011011 -
Gma10g00134 1318 SMART PHD_3 1242 1294 IPR001965 -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 904 951 - -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 642 666 - -
Gma10g00134 1318 SUPERFAMILY BRCT domain 996 1097 IPR036420 -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 201 496 - -
Gma10g00134 1318 CDD BRCT_TopBP1_rpt7 995 1068 - -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 243 293 - -
Gma10g00134 1318 Gene3D BRCT domain 99 224 IPR036420 -
Gma10g00134 1318 Gene3D BRCT domain 988 1104 IPR036420 -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 335 353 - -
Gma10g00134 1318 MobiDBLite consensus disorder prediction 610 712 - -
Gma10g00134 1318 SMART BRCT_7 987 1068 IPR001357 -
Gma10g00134 1318 SMART BRCT_7 106 183 IPR001357 -
Gma10g00134 1318 SMART BRCT_7 8 86 IPR001357 -
Gma10g00134 1318 SMART BRCT_7 1106 1193 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00134 Gma-Chr10 1289755 1296477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00134 129 244 Core DNA Replication Machinery Family AT4G02110 62.069 2.47e-37 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma10g00134 BRCT 6.4e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00134 K10728 - gmx:100783461 2588.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00134 10 1289755 1296477 Gma10g00134 10 1289755 1296477 ECH
Gma10g00134 10 1289755 1296477 Gma02g00130 02 1262933 1269365 GST