Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00129 ATGGAGCTCTCTGTGGTTGCAAGAAACATGGAAGAAGTTGTGTTGCTGGTTGATGATTTGAGATCACTTTCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACAGTTAAGTTTGCTCACAGAGATTGCATTCAGACTTGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAATCCGGATATACAGCAGCCCCAAAGAAATCGCAAGTAGCTGATGCAGCAATGACCATTAGGGATAGCATGCAAATTTCAAGGACTGAACAAGAACCGTTAAATACAAGAATAGTGGGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTTCGGATAGAACCGCAGCTTGTTGTCGATCCCTGGCTTTAGCATTTACACTCATCTTGCTTGTAAGACATCTTTTCGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTCCTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGGCGATCGGAGCCATTCATGACAATATTAAGCGTCACCATCATCAGGATTCTGACGATGACTCATCGATATCTGATGGAGATGATGAAGAAAATGAGACACCAAATGATGAAATTTTAAGACATTCACAATCATAG 711 0.3994 MELSVVARNMEEVVLLVDDLRSLSGISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYESGYTAAPKKSQVADAAMTIRDSMQISRTEQEPLNTRIVGIVEGNNYSECTYASDRTAACCRSLALAFTLILLVRHLFALLTDGMEDYPFTILTVFFLRASGIIIPMYIIIKAIGAIHDNIKRHHHQDSDDDSSISDGDDEENETPNDEILRHSQS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00129 236 SUPERFAMILY RING/U-box 28 81 - -
Gma10g00129 236 MobiDBLite consensus disorder prediction 205 236 - -
Gma10g00129 236 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Gma10g00129 236 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Gma10g00129 236 SMART ringv_2 28 77 IPR011016 GO:0008270
Gma10g00129 236 Pfam Protein of unknown function (DUF3675) 83 194 IPR022143 -
Gma10g00129 236 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 233 IPR033275 -
Gma10g00129 236 CDD RING_CH-C4HC3_MARCH 29 76 - -
Gma10g00129 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 88 IPR013083 -
Gma10g00129 236 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Gma10g00129 236 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 6 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00129 Gma-Chr10 1234567 1237565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00129 29 76 C3H Transcription Factor Family AT2G37950 44.898 2.43e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00129 - - gmx:100776501 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00129 10 1234567 1237565 Gma10g00129 10 1234567 1237565 ECH
Gma10g00129 10 1234567 1237565 Gma02g00125 02 1205906 1208609 GST
Gma19g02052 19 49449994 49452281 Gma10g00129 10 1234567 1237565 PCT
Gma03g02016 03 45772487 45775138 Gma10g00129 10 1234567 1237565 PCT
Gma10g00129 10 1234567 1237565 Gma19g02052 19 49449994 49452281 PCT
Gma10g00129 10 1234567 1237565 Gma03g02016 03 45772487 45775138 PCT