Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00102 ATGGTTGCCAAATCCCATTTCCAAGTCATAATTCTATTTCTTCTTTCATTATTATACATTACATCCAGCTATACTCATACACAGGCTGATTTTGACAAATGGGTATCAAGGAATGTCAAGAATTATCAGAAAAGGAACATTTTGGAAGCCAAATTGAAAGTCGCTGCACCTGGTCCAGATTTGAAGCTGACGCAGGCTGAGAATAACAAAACCATTACAGAAGCTCTTAATAGCATTCCACCACGCAACACAAGGAGAGTTATAGTATCGATCGCACCGGGTGTTTATAGCATCTGTCTCCGGAAGGACGTTCCAGAGTGCAACTGTGGTGTAGATGCGAGCCATTTTGTGGCCATCAACATAAAATTTGAGAATAGTGGTCCGCATGTAATTGGAAGGAAGGGAGAAGAAGCATCTCAGGAAGCAAAGCTGGTTTCTACAATTGCAGTTTCTAGGGATCTCAAGACACTCTCTATGATCACAAAGGCCTTCATTACTTCAACAACTGCTCTATTCAAGAATTGCTATCTAAATTCCACAACCAGGAAGGTGGCTTCCATCACTGCTCAAAAGCGTACCAATTCGTCATTGGAGAGTGGATTCTCATTCAAAAACTGCACAGTAATAGGTAGTGGGCAGGTTTATCTCGGAAGAGCATGGGGAGATTATTCCAGAGTTGTTTTCTCTTACACCTTCATGGACAACATAGTTCTCGCCAAAGGATGGAGTGATTGGGGTGACCAAAAGCGTGACTCGAGAGTATATTATGGAGAATACAAGTGTAGTGGACCAGGAGCTAACTTGGCTGGAAGAGTGCCATGGACACGGGTGCTTACGGATGAAGAGGCCAAGCCTTTTATTGAGATGCAATTCATTGAAGGGGACACTTGGCTTATTAGCCCCTAA 906 0.4294 MVAKSHFQVIILFLLSLLYITSSYTHTQADFDKWVSRNVKNYQKRNILEAKLKVAAPGPDLKLTQAENNKTITEALNSIPPRNTRRVIVSIAPGVYSICLRKDVPECNCGVDASHFVAINIKFENSGPHVIGRKGEEASQEAKLVSTIAVSRDLKTLSMITKAFITSTTALFKNCYLNSTTRKVASITAQKRTNSSLESGFSFKNCTVIGSGQVYLGRAWGDYSRVVFSYTFMDNIVLAKGWSDWGDQKRDSRVYYGEYKCSGPGANLAGRVPWTRVLTDEEAKPFIEMQFIEGDTWLISP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00102 301 Gene3D - 26 106 IPR012334 -
Gma10g00102 301 Gene3D - 161 300 IPR012334 -
Gma10g00102 301 SUPERFAMILY Pectin lyase-like 68 298 IPR011050 -
Gma10g00102 301 PANTHER PECTINESTERASE 25 138 - -
Gma10g00102 301 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 25 138 - -
Gma10g00102 301 Pfam Pectinesterase 167 295 IPR000070 GO:0030599|GO:0042545
Gma10g00102 301 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 166 299 - -
Gma10g00102 301 PANTHER PECTINESTERASE 166 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00102 Gma-Chr10 1009761 1013089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00102 33 301 Carbohydrate Esterase AT1G69940 27.414 1.72e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00102 K01051 - cit:102614801 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00102 10 1009761 1013089 Gma10g00102 10 1009761 1013089 ECH
Gma19g01775 19 47008235 47011442 Gma10g00102 10 1009761 1013089 PCT
Gma10g00102 10 1009761 1013089 Gma19g01775 19 47008235 47011442 PCT