Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g00101 ATGGATACGATCAGTGTTCAGGCGATGAGAAGCTTATCAGATAGTGACTCATTATCATCTGCAACATATGCAAGTGAAGAAGATATGAAAATTAAGAAAGGTCCATGGACTGAGGAAGAAGATTCTGTTCTGATCAACTACGTCAACTTCCAAGGCGAAGGTCAATGGAACTCCCTCGCTCGCTCTGCAGGTCTAAAGCGAACGGGCAAAAGCTGCAGACTGAGATGGTTGAACTATTTGCGACCAAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGCTGGGGCAATCGGTGGGCTAAAATAGCAGAAGAATTGGGTGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCGAGTGGTGAAGCAGGCCAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTCAGGGACACGGTGCGTTTCGTTTGGATGCCGCGCCTTATGGAGCAGATTCAGGCTTCTTTCAGGATTGTTCCTTCAGATTCTTCCCATGGCCTTGATCAAACCACATTGTGCAACACTCAACAAACAGAATCTAGTACTGATGCCAATCCCACCATGTTTTGTGACAACTCAATGGTTTCATCGTACTCATCAGAGGTTGATCTTCAGCCTCTTTCTCTTTCTGATACAAGTACAACTTCATCATCGGAAAGTGCAGAGAAGAAGGAGTCCATATCCTCCTCCCTTTGGCAGCAATGGGACTACTCTGACCTCCAAGCATTTGAACCATGCAATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAACATATGGTTCTTGCAGCAGCATCTTGCTGATCACTTATGA 849 0.4535 MDTISVQAMRSLSDSDSLSSATYASEEDMKIKKGPWTEEEDSVLINYVNFQGEGQWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWAKIAEELGGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTVRFVWMPRLMEQIQASFRIVPSDSSHGLDQTTLCNTQQTESSTDANPTMFCDNSMVSSYSSEVDLQPLSLSDTSTTSSSESAEKKESISSSLWQQWDYSDLQAFEPCNGFGDADLWTDENIWFLQQHLADHL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g00101 282 Gene3D - 32 85 - -
Gma10g00101 282 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Gma10g00101 282 Gene3D - 90 131 - -
Gma10g00101 282 SMART sant 32 82 IPR001005 -
Gma10g00101 282 SMART sant 85 133 IPR001005 -
Gma10g00101 282 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 19 275 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma10g00101 282 CDD SANT 35 80 IPR001005 -
Gma10g00101 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 80 IPR017930 -
Gma10g00101 282 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 19 275 - -
Gma10g00101 282 CDD SANT 106 129 IPR001005 -
Gma10g00101 282 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Gma10g00101 282 SUPERFAMILY Homeodomain-like 30 127 IPR009057 -
Gma10g00101 282 Pfam Myb-like DNA-binding domain 86 129 IPR001005 -
Gma10g00101 282 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Gma10g00101 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g00101 Gma-Chr10 1002995 1004327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g00101 12 279 MYB Transcription Factor Family AT2G47190 46.715 1.05e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma10g00101 Myb_DNA-binding 9.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g00101 K09422 - gmx:100777932 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g00101 10 1002995 1004327 Gma10g00101 10 1002995 1004327 ECH
Gma10g00101 10 1002995 1004327 Gma02g00094 02 972887 980662 GST
Gma19g02079 19 49683722 49685675 Gma10g00101 10 1002995 1004327 PCT
Gma03g02042 03 45999186 46000777 Gma10g00101 10 1002995 1004327 PCT
Gma10g00101 10 1002995 1004327 Gma19g02079 19 49683722 49685675 PCT
Gma10g00101 10 1002995 1004327 Gma03g02042 03 45999186 46000777 PCT